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Report for CCDS70209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70209.1 Public Mus musculus 11 Tmem220 23 108 98 CCDS HistoryNCBI Gene:338369Re-query CCDS DB by CCDS ID:70209.1Re-query CCDS DB by GeneID:338369See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70209.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061786.5 ENSMUSP00000057366.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061786.5Link to Ensembl Protein Viewer:ENSMUSP00000057366.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000061786Re-query CCDS DB by Protein ID:ENSMUSP00000057366
Original member Current member NCBI NM_001291042.1 NP_001277971.1 Accepted alive Link to Nucleotide Sequence:NM_001291042.1Link to Protein Sequence:NP_001277971.1Re-query CCDS DB by Nucleotide ID:NM_001291042Re-query CCDS DB by Protein ID:NP_001277971Link to BLAST:NP_001277971.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277971.1 167 Q8BP07-1 167 100% 0 0

Chromosomal Locations for CCDS 70209.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67025179 67025271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67025909 67025938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67029966 67030026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67031062 67031185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67032181 67032240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67034109 67034244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGGCGCCAGCAGTGGCTACTTGGGCTCCCGGCTTGTGGCGGGCCTGCAACGCACTCATGGCAGCTTTCT
TC
GCCCTGGCCGCTGTGGTGCAGGTAAACGATCCAGATGCAGAGTTGTGGGTGGTGGTGTACATGATCCC
A
GCAGTGCTTACCCTGCTTGTTGGGTTTAATCCTCTTGTCACAGGCAACTTCATCTGGAAGAGTGTGTCT
GCG
ATACACATGCTGTTCTGTGCGCTGTGGGCTGGCGGCTTGGCGTACCACTTCTTGCTTCACGCAAAGC
AG
AACCTCCTAAATGAGGAAGAAGGCAGGGAGCTGTCTGGCCTGGTGATTGTCACAGCATGGATGGCCCT
G
TGCCACAGCTCATCCAAGAATCCAGGTGGTGGAAGAATGCACTTGGCTATTGCTGTTGTAATCACCCTA
CTC
CCACTCCTGTCGTGGGTCTACGTACACATGAACAAGGAGATGCGGTCCTCCTGGCCAACTCACTGCA
AG
ACAGTCATTTAA


Translation (167 aa):
MAPAVATWAPGLWRACNALMAAFFALAAVVQVNDPDAELWVVVYMIPAVLTLLVGFNPLVTGNFIWKSVS
A
IHMLFCALWAGGLAYHFLLHAKQNLLNEEEG
RELSGLVIVTAWMALCHSSSKNPGGGRMHLAIAVVITL
L
PLLSWVYVHMNKEMRSSWPTHCKTVI




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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