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Report for CCDS70154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70154.1 Public Mus musculus 11 Chac2 23 108 98 CCDS HistoryNCBI Gene:68044Re-query CCDS DB by CCDS ID:70154.1Re-query CCDS DB by GeneID:68044See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70154.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020553.4 ENSMUSP00000020553.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020553.4Link to Ensembl Protein Viewer:ENSMUSP00000020553.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020553Re-query CCDS DB by Protein ID:ENSMUSP00000020553
Original member Current member NCBI NM_001290667.1 NP_001277596.1 Accepted alive Link to Nucleotide Sequence:NM_001290667.1Link to Protein Sequence:NP_001277596.1Re-query CCDS DB by Nucleotide ID:NM_001290667Re-query CCDS DB by Protein ID:NP_001277596Link to BLAST:NP_001277596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277596.1 166 Q9CQG1-2 166 100% 0 0

Chromosomal Locations for CCDS 70154.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 30977381 30977746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 30986112 30986246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGTGGGTGTTTGGTTATGGGTCCCTCATCTGGAAGGTGGACTTCCCCTACCAGGACAAGCTGGTTGGTT
ACATCACAAACTACAGTCGGCGCTTCTGGCAAGGTAGCACGGACCACCGCGGGGTCCCAGGCAAGGGCAG
TGTATGGGGTGTTGCTTACAAACTACCAGTAGGAAAAGAAGAGGAAGTAAAAACATACCTTGACTTCAGA
GAGAAAGGAGGCTACAGAACTACGACAGTCATTTTTTATCCAAAAGATTCCACAACAAAACCATTCAGTG
TTTTGCTCTACATTGGAACATGTGATAATCCTAACTATCTTGGCCCTGCACCTCTGGAAGATATTGCTGA
ACAAATTTTTAATGCAGCTGGTCCAAGTGGAAGAAATACAGAATATCTTTTTGAACTTGCAGATTCTGTT
AGGAAACTTGTACCAGAAGATGCAGACGAGCATCTCTTCTCTTTGGAAAAATTAGTAAAGGAACGCTTAG
AAGGAAAATAG

Translation (166 aa):
MWVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKGSVWGVAYKLPVGKEEEVKTYLDFR
EKGGYRTTTVIFYPKDSTTKPFSVLLYIGTCDNPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSV
RKLVPEDADEHLFSLEKLVKERLEGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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