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Report for CCDS70061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70061.1 Public Mus musculus 10 Dnmt3l 23 108 98 CCDS HistoryNCBI Gene:54427Re-query CCDS DB by CCDS ID:70061.1Re-query CCDS DB by GeneID:54427See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70061.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000139539.7 ENSMUSP00000117827.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000139539.7Link to Ensembl Protein Viewer:ENSMUSP00000117827.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000139539Re-query CCDS DB by Protein ID:ENSMUSP00000117827
Original member Current member EBI ENSMUST00000131825.7 ENSMUSP00000119571.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000131825.7Link to Ensembl Protein Viewer:ENSMUSP00000119571.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000131825Re-query CCDS DB by Protein ID:ENSMUSP00000119571
Original member Current member EBI ENSMUST00000123940.1 ENSMUSP00000123015.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123940.1Link to Ensembl Protein Viewer:ENSMUSP00000123015.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123940Re-query CCDS DB by Protein ID:ENSMUSP00000123015
Original member Current member NCBI NM_001284198.1 NP_001271127.1 Accepted alive Link to Nucleotide Sequence:NM_001284198.1Link to Protein Sequence:NP_001271127.1Re-query CCDS DB by Nucleotide ID:NM_001284198Re-query CCDS DB by Protein ID:NP_001271127Link to BLAST:NP_001271127.1
Original member Current member NCBI NM_001284199.1 NP_001271128.1 Accepted alive Link to Nucleotide Sequence:NM_001284199.1Link to Protein Sequence:NP_001271128.1Re-query CCDS DB by Nucleotide ID:NM_001284199Re-query CCDS DB by Protein ID:NP_001271128Link to BLAST:NP_001271128.1
Original member Current member NCBI NM_001284200.1 NP_001271129.1 Accepted alive Link to Nucleotide Sequence:NM_001284200.1Link to Protein Sequence:NP_001271129.1Re-query CCDS DB by Nucleotide ID:NM_001284200Re-query CCDS DB by Protein ID:NP_001271129Link to BLAST:NP_001271129.1

Chromosomal Locations for CCDS 70061.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78057276 78057407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78059647 78059732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78063187 78063349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGTTCCAGTTCCACCGGATCCTGCAGTATGCGCTGCCTCGCCAGGAGAGTCAGCGGCCCTTCTTCTGGA
TATTCATGGACAATCTGCTGCTGACTGAGGATGACCAAGAGACAACTACCCGCTTCCTTCAGACAGAGGC
TGTGACCCTCCAGGATGTCCGTGGCAGAGACTACCAGAATGCTATGCGGGTGTGGAGCAACATTCCAGGG
CTGAAGAGCAAGCATGCGCCCCTGACCCCAAAGGAAGAAGAGTATCTGCAAGCCCAAGTCAGAAGCAGGA
GCAAGCTGGACGCCCCGAAAGTTGACCTCCTGGTGAAGAACTGCCTTCTCCCGCTGAGAGAGTACTTCAA
GTATTTTTCTCAAAACTCACTTCCTCTTTAG

Translation (126 aa):
MFQFHRILQYALPRQESQRPFFWIFMDNLLLTEDDQETTTRFLQTEAVTLQDVRGRDYQNAMRVWSNIPG
LKSKHAPLTPKEEEYLQAQVRSRSKLDAPKVDLLVKNCLLPLREYFKYFSQNSLPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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