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Report for CCDS69952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
69952.1 Public Mus musculus 1 Rgs21 23 108 98 CCDS HistoryNCBI Gene:624910Re-query CCDS DB by CCDS ID:69952.1Re-query CCDS DB by GeneID:624910See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 69952.1
The exon combination of this CCDS representation is inferred based on orthologous transcript alignments, e.g., human AY643711.1.

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 69952.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000184189.2 ENSMUSP00000139265.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184189.2Link to Ensembl Protein Viewer:ENSMUSP00000139265.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184189Re-query CCDS DB by Protein ID:ENSMUSP00000139265
Original member NCBI NM_001290269.1 NP_001277198.1 Updated not alive Link to Nucleotide Sequence:NM_001290269.1Link to Protein Sequence:NP_001277198.1Re-query CCDS DB by Nucleotide ID:NM_001290269Re-query CCDS DB by Protein ID:NP_001277198
Current member NCBI NM_001290269.2 NP_001277198.1 Accepted alive Link to Nucleotide Sequence:NM_001290269.2Link to Protein Sequence:NP_001277198.1Re-query CCDS DB by Nucleotide ID:NM_001290269Re-query CCDS DB by Protein ID:NP_001277198Link to BLAST:NP_001277198.1

Chromosomal Locations for CCDS 69952.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 144519690 144519893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 144536830 144536996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 144541225 144541301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 144545310 144545320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGCCAGTGAAATGCTGTTTCTACAGGTCTCCAACTACGGAAACACTGGCATGGTCTGAAAATATGGACT
CACTCTTAGCTAACCAAGCTGGATTGGATGCTTTCCGAACATTTCTAAAATCAGAATATAGTGAAGAAAA
TGTTGAGTTCTGGCTTGCCTGTGAAGACTTCAAGAAAACAGAATGTAGAGAAAAGATTGCTACCAAAGCT
AAGACGATTTACTCCGAATTCATCGTAGCTGATGCACCAAAAGAGATTAACATTGACTTCAGTACCAGAG
ACCTCATCTCAAGGAATATTGCTGAACCAACTCCAAAATGCTTTGATGAGGCTCAGAAATTAATCTATAG
TCTGATGGCCAAGGATTCATTCCCTCGTTTTCTAAAGTCAGAAATTTATAAGAAATTGGTAAATAGCCAA
CAGGTTGGAAATCATAAAAGATGGCTGCCTTTCCTGTAA

Translation (152 aa):
MPVKCCFYRSPTTETLAWSENMDSLLANQAGLDAFRTFLKSEYSEENVEFWLACEDFKKTECREKIATKA
KTIYSEFIVADAPKEINIDFSTRDLISRNIAEPTPKCFDEAQKLIYSLMAKDSFPRFLKSEIYKKLVNSQ
QVGNHKRWLPFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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