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Report for CCDS66817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66817.1 Public Homo sapiens 15 THSD4 24 110 108 CCDS HistoryNCBI Gene:79875Re-query CCDS DB by CCDS ID:66817.1Re-query CCDS DB by GeneID:79875See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 66817.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357769.4 ENSP00000350413.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357769.4Link to Ensembl Protein Viewer:ENSP00000350413.4Re-query CCDS DB by Nucleotide ID:ENST00000357769Re-query CCDS DB by Protein ID:ENSP00000350413
Original member Current member NCBI NM_001286429.2 NP_001273358.1 Accepted alive Link to Nucleotide Sequence:NM_001286429.2Link to Protein Sequence:NP_001273358.1Re-query CCDS DB by Nucleotide ID:NM_001286429Re-query CCDS DB by Protein ID:NP_001273358Link to BLAST:NP_001273358.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273358.1 658 Q6ZMP0-4 658 100% 0 0

Chromosomal Locations for CCDS 66817.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 71547410 71547481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71660530 71660734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71728549 71728724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71731121 71731217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71737732 71738007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71745106 71745235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71746838 71747042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71748421 71748594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71757902 71758075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71765020 71765199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71771064 71771208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71777232 71777374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1977 nt):
ATGTTTGTCAGCTACCTGATATTAACATTGCTCCACGTTCAAACAGCAGTGTTAGCAAGACCTGGGGGAG
AGAGCATTGGCTGTGATGACTACTTAGGCTCCGACAAAGTCGTGGACAAATGTGGGGTGTGTGGAGGAGA
CAACACGGGCTGTCAGGTTGTGTCGGGCGTGTTTAAGCATGCCCTCACCAGCCTGGGCTACCACCGCGTC
GTGGAGATTCCCGAGGGAGCCACGAAAATCAACATCACGGAGATGTACAAGAGCAACAACTATTTGGCCC
TGAGAAGTCGTTCTGGACGCTCCATCATCAATGGGAACTGGGCAATTGATCGACCAGGAAAATACGAGGG
CGGAGGGACCATGTTCACCTACAAGCGTCCAAATGAGATTTCGAGCACTGCCGGAGAGTCCTTTTTGGCG
GAAGGTCCCACCAACGAGATCTTGGATGTCTACATGATACACCAGCAGCCAAACCCAGGCGTGCACTACG
AGTACGTGATCATGGGGACCAACGCCATCAGCCCCCAGGTGCCACCCCACAGGAGACCAGGGGAACCCTT
CAATGGCCAGATGGTGACAGAAGGCAGGAGCCAGGAGGAGGGAGAACAGAAAGGGAGGAACGAGGAGAAG
GAAGACTTGCGTGGGGAGGCCCCTGAGATGTTCACCTCAGAATCGGCACAGACCTTCCCAGTCAGGCATC
CAGACAGATTTTCTCCCCATCGACCGGACAACTTGGTGCCACCAGCACCGCAGCCCCCACGGCGCAGCCG
GGATCACAACTGGAAGCAGCTTGGGACAACAGAATGTTCCACGACCTGTGGGAAAGGATCGCAGTACCCT
ATTTTCCGCTGTGTGCACAGAAGCACTCATGAAGAGGCTCCTGAGAGTTACTGTGACTCCAGCATGAAGC
CGACCCCCGAGGAGGAGCCCTGCAACATCTTCCCTTGCCCAGCCTTCTGGGACATCGGGGAGTGGTCTGA
GTGCAGCAAGACCTGTGGCCTGGGCATGCAGCACCGCCAGGTTCTGTGCCGCCAGGTGTACGCCAACCGC
AGCCTGACGGTGCAGCCCTACCGCTGCCAGCACCTGGAGAAACCTGAGACCACCAGCACCTGCCAACTCA
AGATCTGCAGCGAGTGGCAGATCCGGACCGACTGGACCTCGTGCTCGGTGCCCTGCGGCGTGGGACAGAG
GACCCGTGATGTGAAGTGTGTGAGCAACATTGGGGATGTGGTTGACGATGAGGAATGCAACATGAAGCTC
CGGCCGAATGACATTGAGAACTGCGACATGGGACCCTGTGCCAAGAGCTGGTTCCTCACCGAGTGGAGCG
AAAGGTGCTCAGCGGAGTGTGGGGCCGGAGTGCGGACACGCTCGGTGGTGTGCATGACCAACCATGTCAG
CAGCCTGCCCCTGGAGGGCTGTGGGAACAACCGGCCGGCAGAGGCCACCCCATGTGACAACGGACCCTGC
ACGGGCAAGGTGGAGTGGTTTGCCGGGAGCTGGAGTCAGTGTTCCATCGAGTGTGGGAGCGGGACGCAAC
AGAGGGAGGTGATTTGTGTTAGAAAGAATGCAGACACCTTTGAAGTGTTGGACCCCTCTGAATGTTCTTT
CCTGGAGAAACCCCCCAGCCAGCAATCCTGCCACCTCAAGCCTTGCGGAGCCAAATGGTTTAGCACCGAA
TGGAGCATGTGTTCCAAGAGCTGCCAGGGTGGCTTTCGGGTCCGGGAAGTGCGGTGTCTGTCTGATGACA
TGACTCTAAGTAACCTCTGTGACCCTCAGTTGAAACCAGAAGAGAGAGAATCTTGTAACCCTCAGGACTG
TGTCCCTGAAGTTGATGAAAACTGCAAGGACAAGTACTACAACTGCAACGTGGTGGTCCAGGCAAGACTC
TGTGTCTACAACTACTACAAGACCGCCTGCTGTGCCTCCTGCACCCGTGTGGCCAACAGGCAGACGGGCT
TCCTGGGGAGCAGATAA

Translation (658 aa):
MFVSYLILTLLHVQTAVLARPGGESIGCDDYLGSDKVVDKCGVCGGDNTGCQVVSGVFKHALTSLGYHRV
VEIPEGATKINITEMYKSNNYLALRSRSGRSIINGNWAIDRPGKYEGGGTMFTYKRPNEISSTAGESFLA
EGPTNEILDVYMIHQQPNPGVHYEYVIMGTNAISPQVPPHRRPGEPFNGQMVTEGRSQEEGEQKGRNEEK
EDLRGEAPEMFTSESAQTFPVRHPDRFSPHRPDNLVPPAPQPPRRSRDHNWKQLGTTECSTTCGKGSQYP
IFRCVHRSTHEEAPESYCDSSMKPTPEEEPCNIFPCPAFWDIGEWSECSKTCGLGMQHRQVLCRQVYANR
SLTVQPYRCQHLEKPETTSTCQLKICSEWQIRTDWTSCSVPCGVGQRTRDVKCVSNIGDVVDDEECNMKL
RPNDIENCDMGPCAKSWFLTEWSERCSAECGAGVRTRSVVCMTNHVSSLPLEGCGNNRPAEATPCDNGPC
TGKVEWFAGSWSQCSIECGSGTQQREVICVRKNADTFEVLDPSECSFLEKPPSQQSCHLKPCGAKWFSTE
WSMCSKSCQGGFRVREVRCLSDDMTLSNLCDPQLKPEERESCNPQDCVPEVDENCKDKYYNCNVVVQARL
CVYNYYKTACCASCTRVANRQTGFLGSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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