NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6643.1 Public Homo sapiens 9 TMC1 24 110 108 CCDS HistoryNCBI Gene:117531Re-query CCDS DB by CCDS ID:6643.1Re-query CCDS DB by GeneID:117531See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6643.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297784.10 ENSP00000297784.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297784.10Link to Ensembl Protein Viewer:ENSP00000297784.6Re-query CCDS DB by Nucleotide ID:ENST00000297784Re-query CCDS DB by Protein ID:ENSP00000297784
Original member Current member EBI ENST00000340019.4 ENSP00000341433.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340019.4Link to Ensembl Protein Viewer:ENSP00000341433.3Re-query CCDS DB by Nucleotide ID:ENST00000340019Re-query CCDS DB by Protein ID:ENSP00000341433
Original member Current member EBI ENST00000645208.2 ENSP00000494684.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645208.2Link to Ensembl Protein Viewer:ENSP00000494684.1Re-query CCDS DB by Nucleotide ID:ENST00000645208Re-query CCDS DB by Protein ID:ENSP00000494684
Original member Current member NCBI NM_138691.3 NP_619636.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138691.3Link to Protein Sequence:NP_619636.2Re-query CCDS DB by Nucleotide ID:NM_138691Re-query CCDS DB by Protein ID:NP_619636Link to BLAST:NP_619636.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619636.2 760 Q8TDI8 760 100% 0 0

Chromosomal Locations for CCDS 6643.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 72648649 72648664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72688709 72688756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72694543 72694714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72700518 72700643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72740119 72740209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72742444 72742525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72751850 72751956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72754786 72754884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72772413 72772555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72788339 72788483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72789123 72789317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72791886 72792065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72792191 72792352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72805382 72805510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72816143 72816210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72820842 72821081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72826869 72826994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72830451 72830529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72830631 72830682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72835951 72835973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2283 nt):
ATGTCACCCAAAAAAGTACAAATCAAAGTGGAGGAAAAAGAAGACGAGACTGAGGAAAGCTCAAGTGAAG
AGGAAGAGGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGACCAAAGAGGAAACGGACCAGAGA
TGTTATCAATGAGGATGACCCAGAACCTGAACCAGAGGATGAAGAAACAAGGAAGGCAAGAGAAAAAGAG
AGGAGGAGGAGGCTAAAGAGAGGAGCAGAAGAAGAAGAAATTGATGAAGAGGAATTGGAAAGATTGAAGG
CAGAGTTAGATGAGAAAAGACAAATAATTGCTACTGTCAAATGCAAACCATGGAAGATGGAGAAGAAAAT
TGAAGTTCTCAAGGAGGCAAAAAAATTTGTGAGTGAAAATGAAGGGGCTCTTGGGAAAGGAAAAGGAAAA
CGGTGGTTTGCATTTAAGATGATGATGGCCAAGAAATGGGCAAAATTCCTCCGTGATTTTGAGAACTTCA
AAGCTGCGTGTGTCCCATGGGAAAATAAAATCAAGGCTATTGAAAGTCAGTTTGGCTCCTCAGTGGCCTC
ATACTTCCTCTTCTTGAGATGGATGTATGGAGTCAATATGGTTCTCTTTATCCTGACATTTAGCCTCATC
ATGTTGCCAGAGTACCTCTGGGGTTTGCCATATGGCAGTTTACCTAGGAAAACCGTTCCCAGAGCCGAAG
AGGCATCGGCAGCAAACTTTGGTGTGTTGTACGACTTCAATGGTTTGGCACAATATTCCGTTCTCTTTTA
TGGCTATTATGACAATAAACGAACAATTGGATGGATGAATTTCAGGTTGCCGCTCTCCTATTTTCTAGTG
GGGATTATGTGCATTGGATACAGCTTTCTGGTTGTCCTCAAAGCAATGACCAAAAACATTGGTGATGATG
GAGGTGGAGATGACAACACTTTCAATTTCAGCTGGAAGGTCTTTACCAGCTGGGACTACCTGATCGGCAA
TCCTGAAACAGCAGACAACAAATTTAATTCTATCACAATGAACTTTAAGGAAGCTATCACAGAAGAAAAA
GCAGCCCAAGTAGAAGAAAACGTCCACTTGATCAGATTCCTGAGGTTTCTGGCTAACTTCTTCGTGTTTC
TAACACTTGGAGGGAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAGGAATTTGCACAGCAAGA
TCCTGACACCCTTGGGTGGTGGGAAAAAAATGAAATGAACATGGTTATGTCCCTCCTAGGGATGTTCTGT
CCAACATTGTTTGACTTATTTGCTGAATTAGAAGACTACCATCCTCTCATCGCTTTGAAATGGCTACTGG
GACGCATTTTTGCTCTTCTTTTAGGCAATTTATACGTATTTATTCTTGCATTAATGGATGAGATTAACAA
CAAGATTGAAGAGGAGAAGCTAGTAAAGGCCAATATTACCCTTTGGGAAGCCAATATGATCAAGGCCTAC
AATGCATCATTCTCTGAAAATAGCACTGGACCACCCTTTTTTGTTCACCCTGCAGATGTACCTCGAGGAC
CTTGCTGGGAAACAATGGTGGGACAGGAGTTTGTGAGGCTGACAGTCTCTGATGTTCTGACCACCTACGT
CACAATCCTCATTGGGGACTTTCTAAGGGCATGTTTTGTGAGGTTTTGCAATTATTGCTGGTGCTGGGAC
TTGGAGTATGGATATCCTTCATACACCGAATTCGACATCAGTGGCAACGTCCTCGCTCTGATCTTCAACC
AAGGCATGATCTGGATGGGCTCCTTCTTTGCTCCCAGCCTCCCAGGCATCAATATCCTTCGACTCCATAC
ATCCATGTACTTCCAGTGCTGGGCCGTTATGTGCTGCAATGTTCCTGAGGCCAGGGTCTTCAAAGCTTCC
AGATCAAATAACTTCTACCTGGGCATGCTACTGCTCATCCTCTTCCTGTCCACAATGCCTGTCTTGTACA
TGATCGTGTCCCTCCCACCATCTTTTGATTGTGGTCCATTCAGTGGCAAAAATAGAATGTTTGAAGTCAT
TGGAGAGACCCTGGAGCACGATTTCCCAAGCTGGATGGCGAAGATCTTGAGACAGCTTTCAAACCCTGGG
CTGGTCATTGCTGTCATTTTGGTGATGGTTTTGGCCATCTATTATCTCAATGCTACTGCCAAGGGCCAGA
AGGCAGCGAATCTGGATCTCAAAAAGAAGATGAAAATGCAAGCTTTGGAGAACAAAATGCGAAACAAGAA
AATGGCAGCTGCACGAGCAGCTGCAGCTGCTGGTCGCCAGTAA

Translation (760 aa):
MSPKKVQIKVEEKEDETEESSSEEEEEVEDKLPRRESLRPKRKRTRDVINEDDPEPEPEDEETRKAREKE
RRRRLKRGAEEEEIDEEELERLKAELDEKRQIIATVKCKPWKMEKKIEVLKEAKKFVSENEGALGKGKGK
RWFAFKMMMAKKWAKFLRDFENFKAACVPWENKIKAIESQFGSSVASYFLFLRWMYGVNMVLFILTFSLI
MLPEYLWGLPYGSLPRKTVPRAEEASAANFGVLYDFNGLAQYSVLFYGYYDNKRTIGWMNFRLPLSYFLV
GIMCIGYSFLVVLKAMTKNIGDDGGGDDNTFNFSWKVFTSWDYLIGNPETADNKFNSITMNFKEAITEEK
AAQVEENVHLIRFLRFLANFFVFLTLGGSGYLIFWAVKRSQEFAQQDPDTLGWWEKNEMNMVMSLLGMFC
PTLFDLFAELEDYHPLIALKWLLGRIFALLLGNLYVFILALMDEINNKIEEEKLVKANITLWEANMIKAY
NASFSENSTGPPFFVHPADVPRGPCWETMVGQEFVRLTVSDVLTTYVTILIGDFLRACFVRFCNYCWCWD
LEYGYPSYTEFDISGNVLALIFNQGMIWMGSFFAPSLPGINILRLHTSMYFQCWAVMCCNVPEARVFKAS
RSNNFYLGMLLLILFLSTMPVLYMIVSLPPSFDCGPFSGKNRMFEVIGETLEHDFPSWMAKILRQLSNPG
LVIAVILVMVLAIYYLNATAKGQKAANLDLKKKMKMQALENKMRNKKMAAARAAAAAGRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH