NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6616.1 Public Homo sapiens 9 CNTNAP3 24 110 108 CCDS HistoryNCBI Gene:79937Re-query CCDS DB by CCDS ID:6616.1Re-query CCDS DB by GeneID:79937See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6616.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297668.11 ENSP00000297668.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297668.11Link to Ensembl Protein Viewer:ENSP00000297668.6Re-query CCDS DB by Nucleotide ID:ENST00000297668Re-query CCDS DB by Protein ID:ENSP00000297668
Original member Current member NCBI NM_033655.5 NP_387504.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033655.5Link to Protein Sequence:NP_387504.2Re-query CCDS DB by Nucleotide ID:NM_033655Re-query CCDS DB by Protein ID:NP_387504Link to BLAST:NP_387504.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_387504.2 1288 Q9BZ76-1 1288 100% 0 0

Chromosomal Locations for CCDS 6616.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 39073890 39074011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39078385 39078456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39078690 39078920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39085736 39085823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39086716 39086849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39088423 39088647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39099911 39100150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39102497 39102715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39103744 39103914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39109160 39109287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39118103 39118259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39132932 39133135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39140519 39140638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39144240 39144346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39149806 39149977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39165933 39166076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39171369 39171630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39175949 39176092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39177318 39177502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39178157 39178360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39193128 39193275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39238993 39239186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39266896 39267006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39287980 39288064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3867 nt):
ATGGCTTCAGTGGCCTGGGCCGTCCTCAAGGTGCTGCTGCTTCTCCCCACTCAGACTTGGAGCCCCGTGG
GAGCAGGAAATCCACCTGACTGTGATGCCCCACTGGCCTCTGCCTTGCCTAGGTCATCCTTCAGCAGCTC
CTCAGAGCTGTCCAGCAGCCACGGCCCGGGGTTTTCAAGGCTTAATCGAAGAGATGGAGCTGGTGGCTGG
ACTCCACTTGTGTCAAATAAATACCAATGGCTGCAAATTGACCTTGGAGAGAGAATGGAGGTCACTGCTG
TCGCCACCCAAGGAGGATATGGGAGCTCTGACTGGGTGACCAGCTACCTCCTGATGTTCAGTGATGGTGG
GAGAAACTGGAAGCAGTATCGCCGAGAAGAAAGCATCTGGGGTTTTCCAGGAAACACAAACGCAGACAGT
GTGGTGCACTACAGACTCCAGCCTCCCTTTGAAGCCAGGTTCCTGCGCTTTCTCCCTTTAGCCTGGAACC
CTAGGGGCAGGATTGGGATGCGGATCGAAGTGTACGGATGTGCATATAAATCTGAGGTGGTTTATTTTGA
TGGACAAAGTGCTCTGCTGTATAGACTTGATAAAAAACCTTTAAAACCAATAAGAGACGTTATTTCTTTG
AAATTTAAAGCCATGCAGAGCAATGGAATTCTACTTCACAGAGAAGGACAACATGGAAATCACATTACTC
TGGAATTAATTAAAGGAAAGCTTGTCTTTTTTCTTAATTCAGGCAATGCTAAGCTGCCTTCCACTATTGC
TCCTGTGACCCTCACCCTGGGCAGCCTGCTGGACGACCAGCACTGGCATTCCGTCCTCATCGAGCTCCTC
GACACGCAGGTCAACTTCACCGTGGACAAACACACTCATCATTTCCAAGCAAAGGGAGATTCCAGTTACT
TGGATCTTAATTTTGAGATCAGCTTTGGGGGAATTCCGACACCCGGAAGATCGCGGGCATTCAGACGTAA
AAGCTTTCATGGGTGTTTAGAAAATCTTTATTATAATGGAGTGGATGTTACCGAATTAGCCAAGAAACAC
AAACCACAGATCCTCATGATGGGAAATGTGTCCTTCTCATGTCCACAGCCACAGACTGTCCCTGTGACTT
TTCTGAGCTCCAGGAGTTATCTGGCTCTGCCAGGCAACTCTGGGGAGGACAAAGTGTCTGTCACTTTTCA
ATTTCGAACGTGGAACAGAGCAGGACATTTGCTTTTCGGCGAACTTCGACGTGGTTCAGGGAGTTTCGTC
CTCTTTCTTAAGGATGGCAAGCTCAAACTGAGTCTCTTCCAGCCGGGACAGTCACCAAGGAATGTCACAG
CAGGTGCTGGATTAAACGATGGGCAGTGGCACTCTGTGTCCTTCTCTGCCAAGTGGAGCCATATGAATGT
GGTGGTGGACGATGACACAGCTGTTCAGCCCCTGGTGGCTGTGCTCATTGATTCAGGTGACACCTATTAT
TTTGGAGGCTGCCTGGACAACAGCTCTGGCTCTGGATGTAAAAGCCCCCTGGGAGGGTTTCAGGGCTGCC
TAAGGCTCATCACCATTGGTGACAAAGCGGTGGATCCCATCTTAGTACAGCAGGGGGCGCTGGGGAGTTT
CAGGGACCTCCAGATAGACTCCTGCGGCATCACAGACAGGTGCTTGCCCAGCTACTGTGAGCATGGGGGC
GAGTGTTCCCAGTCGTGGGACACCTTCTCCTGTGACTGTCTAGGCACAGGCTATACGGGCGAGACCTGCC
ATTCCTCTCTCTACGAGCAGTCTTGTGAAGCCCACAAGCACCGAGGGAACCCGTCTGGGCTTTACTATAT
TGATGCAGATGGAAGTGGCCCCCTGGGACCATTTCTTGTGTACTGCAATATGACAGCAGACGCCGCGTGG
ACGGTGGTGCAGCACGGTGGCCCCGACGCGGTGACCCTCCGAGGTGCCCCCAGCGGGCACCCGCGCTCGG
CTGTGTCCTTCGCGTACGCAGCGGGCGCGGGGCAGCTGCGGTCCGCGGTGAACCTGGCGGAGCGCTGCGA
GCAGCGGCTGGCTCTGCGCTGCGGGACGGCGCGGCGCCCGGACTCACGAGATGGAACCCCACTGAGCTGG
TGGGTTGGAAGAACCAATGAAACACACACTTCCTGGGGAGGTTCTCTGCCTGATGCTCAAAAGTGTACTT
GTGGATTAGAGGGGAACTGCATTGATTCTCAGTATTACTGCAACTGTGATGCTGGCCGGAATGAATGGAC
TAGTGACACAATAGTCCTTTCCCAAAAGGAGCACCTGCCAGTCACTCAGATTGTGATGACAGACGCAGGC
CGACCACATTCCGAAGCAGCTTATACACTGGGGCCACTGCTCTGCCGCGGAGATCAGTCATTCTGGAATT
CAGCTTCCTTCAACACTGAGACTTCATACCTTCATTTCCCTGCTTTCCACGGAGAACTCACTGCTGACGT
GTGCTTCTTTTTTAAGACCACAGTTTCCTCCGGGGTGTTTATGGAGAACCTGGGGATCACAGATTTCATC
AGGATTGAGCTGCGTGCTCCCACAGAAGTGACCTTTTCCTTCGATGTGGGGAATGGACCTTGTGAGGTCA
CGGTGCAGTCACCCACTCCCTTTAATGACAATCAGTGGCACCACGTGAGGGCAGAGAGAAATGTTAAAGG
AGCGTCTCTTCAAGTTGATCAGCTTCCTCAGAAGATGCAGCCTGCCCCTGCTGATGGGCACGTTCGTTTA
CAGCTCAACAGCCAGCTCTTCATTGGTGGAACGGCCACCAGACAGAGAGGCTTTCTAGGATGCATTCGGT
CTCTGCAGTTGAACGGGGTGGCCCTGGATCTGGAAGAAAGAGCCACAGTGACGCCAGGAGTGGAGCCAGG
GTGTGCAGGACACTGCAGCACCTATGGACACTTGTGTCGCAATGGAGGGAGATGCAGAGAGAAACGCAGG
GGGGTCACCTGTGACTGTGCCTTCTCAGCCTATGATGGGCCGTTCTGCTCCAATGAGATTTCCGCATATT
TTGCAACTGGCTCCTCAATGACATACCATTTTCAAGAACATTACACTTTAAGTGAAAACTCCAGCTCTCT
CGTTTCTTCATTACACAGAGATGTAACATTGACCAGAGAAATGATCACACTGAGCTTCCGAACCACACGA
ACTCCGAGCTTATTGCTGTATGTGAGCTCTTTCTATGAGGAATACCTTTCAGTTATCCTCGCCAACAATG
GAAGTTTGCAGATTAGGTACAAGCTAGATAGACATCAAAATCCTGATGCATTTACCTTTGATTTTAAAAA
CATGGCTGATGGGCAACTTCACCAAGTGAAGATTAACAGAGAAGAAGCTGTGGTCATGGTAGAGGTTAAC
CAGAGCACAAAGAAACAAGTCATCTTGTCCTCAGGGACAGAATTCAACGCCGTCAAATCTCTCATATTGG
GAAAGGTTTTAGAGGCTGCCGGCGCGGACCCGGACACAAGGCGGGCGGCGACTAGTGGCTTCACTGGCTG
CCTCTCGGCGGTGCGCTTCGGCCGCGCTGCTCCCCTGAAGGCGGCGCTGCGCCCCAGCGGCCCCTCCCGG
GTCACCGTCCGCGGCCACGTGGCCCCTATGGCCCGCTGCGCAGCGGGGGCGGCGTCCGGCTCCCCGGCGC
GGGAACTGGCTCCCCGACTCGCGGGGGGCGCAGGTCGTTCTGGACCAGCGGATGAGGGAGAGCCCTTGGT
TAATGCAGACAGAAGAGACTCTGCTGTCATCGGAGGTGTGATAGCAGTGGTGATATTTATTTTGCTTTGC
ATCACTGCCATAGCCATACGCATCTATCAACAGAGAAAGTTACGCAAAGAAAATGAGTCAAAAGTCTCAA
AAAAAGAAGAGTGCTAG

Translation (1288 aa):
MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGW
TPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADS
VVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYKSEVVYFDGQSALLYRLDKKPLKPIRDVISL
KFKAMQSNGILLHREGQHGNHITLELIKGKLVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELL
DTQVNFTVDKHTHHFQAKGDSSYLDLNFEISFGGIPTPGRSRAFRRKSFHGCLENLYYNGVDVTELAKKH
KPQILMMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELRRGSGSFV
LFLKDGKLKLSLFQPGQSPRNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVAVLIDSGDTYY
FGGCLDNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDRCLPSYCEHGG
ECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGNPSGLYYIDADGSGPLGPFLVYCNMTADAAW
TVVQHGGPDAVTLRGAPSGHPRSAVSFAYAAGAGQLRSAVNLAERCEQRLALRCGTARRPDSRDGTPLSW
WVGRTNETHTSWGGSLPDAQKCTCGLEGNCIDSQYYCNCDAGRNEWTSDTIVLSQKEHLPVTQIVMTDAG
RPHSEAAYTLGPLLCRGDQSFWNSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDFI
RIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRL
QLNSQLFIGGTATRQRGFLGCIRSLQLNGVALDLEERATVTPGVEPGCAGHCSTYGHLCRNGGRCREKRR
GVTCDCAFSAYDGPFCSNEISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTR
TPSLLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVN
QSTKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGRAAPLKAALRPSGPSR
VTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPADEGEPLVNADRRDSAVIGGVIAVVIFILLC
ITAIAIRIYQQRKLRKENESKVSKKEEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH