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Report for CCDS65069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
65069.1 Public Homo sapiens 9 TLE4 24 110 108 CCDS HistoryNCBI Gene:7091Re-query CCDS DB by CCDS ID:65069.1Re-query CCDS DB by GeneID:7091See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 65069.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376537.8 ENSP00000365720.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376537.8Link to Ensembl Protein Viewer:ENSP00000365720.4Re-query CCDS DB by Nucleotide ID:ENST00000376537Re-query CCDS DB by Protein ID:ENSP00000365720
Original member Current member NCBI NM_001282748.2 NP_001269677.1 Accepted alive Link to Nucleotide Sequence:NM_001282748.2Link to Protein Sequence:NP_001269677.1Re-query CCDS DB by Nucleotide ID:NM_001282748Re-query CCDS DB by Protein ID:NP_001269677Link to BLAST:NP_001269677.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269677.1 805 Q04727-3 805 100% 0 0

Chromosomal Locations for CCDS 65069.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 79572791 79572835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79573689 79573786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79574873 79574936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79576133 79576177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79612656 79612718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79627374 79627448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79652593 79652794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79654059 79654075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79704783 79704902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79705889 79705942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79706747 79706899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79707123 79707218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79708118 79708250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79708593 79708786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79709623 79709699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79718722 79718971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79720046 79720293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79721741 79721888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79722451 79722601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79722959 79723035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79725037 79725144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2418 nt):
ATGATTCGCGACCTGAGCAAGATGTACCCGCAGACCAGACACCCAGCACCGCATCAGCCTGCTCAACCCT
TTAAATTTACAATTTCCGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCA
CAGTCTGAAGCTGGAATGTGAGAAACTCGCCAGTGAGAAGACAGAGATGCAGCGGCATTATGTCATGTAT
TATGAAATGTCCTATGGGTTGAATATAGAAATGCACAAGCAGGCAGAGATTGTCAAGAGGCTGAATGCTA
TCTGTGCACAAGTCATTCCTTTCCTGTCCCAAGAGCACCAGCAACAAGTGGTGCAGGCTGTGGAACGGGC
CAAGCAGGTGACCATGGCAGAACTGAACGCCATCATTGGGCAACAACTCCAGGCCCAGCATTTATCACAT
GGACATGGTCTCCCCGTACCTCTGACTCCACACCCTTCAGGGCTCCAGCCCCCTGCCATTCCACCCATCG
GTAGCAGTGCCGGGCTTCTGGCCCTCTCCAGTGCTCTAGGAGGTCAGTCCCATCTTCCAATTAAAGATGA
GAAGAAGCACCATGACAATGATCACCAAAGAGACAGAGACTCCATCAAGAGCTCTTCAGTATCCCCATCA
GCCAGTTTCCGAGGTGCTGAGAAGCACAGAAACTCCGCAGACTACTCCTCAGAGAGCAAAAAGCAGAAAA
CTGAAGAAAAGGAAATTGCAGCTCGTTATGACAGCGATGGTGAGAAAAGTGATGACAACTTGGTGGTTGA
CGTTTCCAATGAGGATCCATCTTCCCCTCGAGGGAGCCCAGCACATTCCCCCAGAGAGAATGGCCTAGAC
AAGACACGCCTGCTCAAGAAAGATGCCCCGATTAGTCCAGCCTCTATTGCATCTTCCAGCAGTACTCCCT
CCTCCAAATCCAAAGAACTTAGCCTTAAGAGGGATATGGGGAAATTGAGTGAAACACGTCTTAGCGAAGA
TGAACAATGCACATTGGGGTTACAGAGATGGTTTTGTCGCCTGTGGTTTATGAATGAAAAATCTACTACT
CCCGTCTCAAAGTCCAATACCCCTACTCCACGAACTGATGCGCCCACCCCAGGCAGTAACTCTACTCCCG
GATTGAGGCCTGTACCTGGAAAACCACCAGGAGTTGACCCTTTGGCCTCAAGCCTAAGGACCCCAATGGC
AGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGAATGAACGGAGAGCTGACCAGC
CCCGGAGCGGCCTACGCTGGGCTCCACAACATCTCCCCTCAGATGAGCGCAGCTGCTGCCGCCGCCGCTG
CTGCTGCTGCCTATGGGAGATCACCAGTGGTGGGATTTGATCCACACCATCACATGCGTGTGCCAGCAAT
ACCTCCAAACCTGACAGGCATTCCAGGAGGAAAACCAGCATACTCCTTCCATGTTAGCGCAGATGGTCAG
ATGCAGCCTGTCCCTTTTCCACCCGACGCCCTCATCGGACCTGGAATCCCCCGGCATGCTCGCCAGATCA
ACACCCTCAACCACGGGGAGGTGGTGTGCGCGGTGACCATCAGCAACCCCACGAGACACGTGTACACGGG
TGGGAAGGGCTGCGTCAAGGTCTGGGACATCAGCCACCCAGGCAATAAGAGTCCTGTCTCCCAGCTCGAC
TGTCTGAACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCCTAATTGTTGGAG
GGGAAGCCAGTACTTTGTCCATTTGGGACCTGGCGGCTCCAACCCCACGCATCAAGGCAGAGCTGACATC
CTCGGCCCCCGCCTGCTATGCCCTGGCCATCAGCCCCGATTCCAAGGTCTGCTTCTCATGCTGCAGCGAC
GGCAACATCGCTGTGTGGGATCTGCACAACCAGACCTTGGTGAGGCAATTCCAGGGCCACACAGATGGAG
CCAGCTGTATTGACATTTCTAATGATGGCACCAAGCTCTGGACAGGTGGTTTGGACAACACGGTCAGGTC
CTGGGACCTGCGCGAGGGGCGGCAGCTGCAGCAGCACGACTTCACCTCCCAGATCTTTTCTCTGGGCTAC
TGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTTTTGCATGTCACCAAGC
CAGACAAATACCAACTACATCTTCATGAGAGCTGTGTGCTGTCGCTCAAGTTTGCCCATTGTGGCAAATG
GTTTGTAAGCACTGGAAAGGACAACCTTCTGAATGCCTGGAGAACACCTTATGGGGCCAGTATATTCCAG
TCCAAAGAATCCTCATCGGTGCTTAGCTGTGACATCTCCGTGGACGACAAATACATTGTCACTGGCTCTG
GGGATAAGAAGGCCACAGTTTATGAAGTTATTTATTAA

Translation (805 aa):
MIRDLSKMYPQTRHPAPHQPAQPFKFTISESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMY
YEMSYGLNIEMHKQAEIVKRLNAICAQVIPFLSQEHQQQVVQAVERAKQVTMAELNAIIGQQLQAQHLSH
GHGLPVPLTPHPSGLQPPAIPPIGSSAGLLALSSALGGQSHLPIKDEKKHHDNDHQRDRDSIKSSSVSPS
ASFRGAEKHRNSADYSSESKKQKTEEKEIAARYDSDGEKSDDNLVVDVSNEDPSSPRGSPAHSPRENGLD
KTRLLKKDAPISPASIASSSSTPSSKSKELSLKRDMGKLSETRLSEDEQCTLGLQRWFCRLWFMNEKSTT
PVSKSNTPTPRTDAPTPGSNSTPGLRPVPGKPPGVDPLASSLRTPMAVPCPYPTPFGIVPHAGMNGELTS
PGAAYAGLHNISPQMSAAAAAAAAAAAYGRSPVVGFDPHHHMRVPAIPPNLTGIPGGKPAYSFHVSADGQ
MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLD
CLNRDNYIRSCRLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD
GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGY
CPTGEWLAVGMENSNVEVLHVTKPDKYQLHLHESCVLSLKFAHCGKWFVSTGKDNLLNAWRTPYGASIFQ
SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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