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Report for CCDS64366.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64366.1 Public Homo sapiens 6 ARMH2 24 110 108 CCDS HistoryNCBI Gene:101928603Re-query CCDS DB by CCDS ID:64366.1Re-query CCDS DB by GeneID:101928603See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 64366.1
This CCDS representation lacks full-length human transcript support and it is therefore inferred. Th full-length exon combination is inferred from partial human transcripts and RNA-seq data.

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 64366.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000565469.4 ENSP00000454913.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000565469.4Link to Ensembl Protein Viewer:ENSP00000454913.1Re-query CCDS DB by Nucleotide ID:ENST00000565469Re-query CCDS DB by Protein ID:ENSP00000454913
Original member Current member NCBI NM_001282492.2 NP_001269421.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282492.2Link to Protein Sequence:NP_001269421.1Re-query CCDS DB by Nucleotide ID:NM_001282492Re-query CCDS DB by Protein ID:NP_001269421Link to BLAST:NP_001269421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269421.1 230 H3BNL8 230 100% 0 0

Chromosomal Locations for CCDS 64366.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 24797410 24797837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24798593 24798857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGGCTAACAGCCGATTTTCTTGTACGCAAATTTGGGTTAAGATGTATGGGTATTTTGCGGGGCTGTGTC
GGCGTCTCCAGAAATTCTGGCGTGTCACTGTTAAGGGCTTTTTTGTTAAGAAGAAGGAAAAAAAAATCCC
TTCAGCTGAGACTTATTTTCATGAGGAAAAAATTGTTGTACTTGGCCAAGTGTTGATGAATGAATCTCTA
CCCATTGAGAAGAGAGCTCAAGCTGCCCAGAAAATTGGACTGCTGGCCTTCACAGGAGGACCACCTGCTG
GGAACTTTGCAGCTGAGTACATGGAAGAAGTGGCTCACTTGTTGCAAGATGAGGAGTTGGCACCAAAAAT
AAAGATCCTGCTGCTCCAGAGTGTGGCATGTTGGTGTTACTTAAACCCTGTCAGCCAGAAAAGAGCCAAA
AGTCTGCAATTTATTCCTATTCTCATTAGTTTTTTTGAAGGCAGATTCGAGTCTACTATCAAAAGTGAAA
CAAACAGCTACCTCCTCCTTAAATTTTGGACTTGTTACGTTCTCTCTGTCATGACATGCAATAACTTGTC
TTGCGTCAAGGAGCTTAAAGACCACAGTGCTCTAAAATATCATTTGCAAATGTTGGCTGCTGAGAATTGG
TCTGGATGGACAGAGAATTTTGCAGAGGTGCTGTATTTCCTAATTGGTTTTCATAGGAATTAG

Translation (230 aa):
MANSRFSCTQIWVKMYGYFAGLCRRLQKFWRVTVKGFFVKKKEKKIPSAETYFHEEKIVVLGQVLMNESL
PIEKRAQAAQKIGLLAFTGGPPAGNFAAEYMEEVAHLLQDEELAPKIKILLLQSVACWCYLNPVSQKRAK
SLQFIPILISFFEGRFESTIKSETNSYLLLKFWTCYVLSVMTCNNLSCVKELKDHSALKYHLQMLAAENW
SGWTENFAEVLYFLIGFHRN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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