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Report for CCDS63498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63498.1 Public Homo sapiens 22 SERHL2 24 110 108 CCDS HistoryNCBI Gene:253190Re-query CCDS DB by CCDS ID:63498.1Re-query CCDS DB by GeneID:253190See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 63498.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335879.5 ENSP00000336578.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000335879.5Link to Ensembl Protein Viewer:ENSP00000336578.5Re-query CCDS DB by Nucleotide ID:ENST00000335879Re-query CCDS DB by Protein ID:ENSP00000336578
Original member Current member NCBI NM_001284334.2 NP_001271263.1 Accepted alive Link to Nucleotide Sequence:NM_001284334.2Link to Protein Sequence:NP_001271263.1Re-query CCDS DB by Nucleotide ID:NM_001284334Re-query CCDS DB by Protein ID:NP_001271263Link to BLAST:NP_001271263.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271263.1 250 Q9H4I8-2 250 100% 0 0

Chromosomal Locations for CCDS 63498.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 42554021 42554042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42555232 42555345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42556064 42556083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42556514 42556588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42558348 42558457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42560186 42560265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42566304 42566338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42571121 42571203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42572436 42572529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42573936 42574055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGAGTGAGAACGCCGCACCAGACTTTTATTACGTTGCCATGGATTTCGGAGGTCATGGGCTCTCGTCCC
ATTACAGCCCAGGTGTCCCATATTACCTCCAGACTTTTGTGAGTGAGATCCGAAGAGTTGTGGCAGGTGG
CGTCGTGGGCGGAATGTTTTTCTGTACCTTCCCCGAGATGGTGGATAAACTTATCTTGCTGGACACGCCG
CTCTTTCTCCTGGAATCAGATGAAATGGAGAACTTGCTGACCTACAAGCGGAGAGCCATAGAGCACGTGC
TGCAGGTAGAGGCCTCCCAGGAGCCCTCGCACGTGTTCAGCCTGAAGCAGCTGCTGCAGAGGTTACTGAA
GAGCAATAGCCACTTGAGTGAGGAGTGCGGGGAGCTTCTCCTGCAAAGAGGAACCACGAAGGTGGCCACA
GGTCTGGTTCTGAACAGAGACCAGAGGCTCGCCTGGGCAGAGAACAGCATTGACTTCATCAGCAGGGAGC
TGTGTGCGCATTCCATCAGGAAGCTGCAGGCCCATGTCCTGTTGATCAAAGCAGTCCACGGATATTTTGA
TTCAAGACAGAATTACTCTGAGAAGGAGTCCCTGTCGTTCATGATAGACACGATGAAATCCACCCTCAAA
GAGCAGTTCCAGTTTGTGGAAGTCCCAGGCAATCACTGTGTCCACATGAGCGAACCCCAGCACGTGGCCA
GTATCATCAGCTCCTTCTTACAGTGCACACACATGCTCCCAGCCCAGCTGTAG

Translation (250 aa):
MSENAAPDFYYVAMDFGGHGLSSHYSPGVPYYLQTFVSEIRRVVAGGVVGGMFFCTFPEMVDKLILLDTP
LFLLESDEMENLLTYKRRAIEHVLQVEASQEPSHVFSLKQLLQRLLKSNSHLSEECGELLLQRGTTKVAT
GLVLNRDQRLAWAENSIDFISRELCAHSIRKLQAHVLLIKAVHGYFDSRQNYSEKESLSFMIDTMKSTLK
EQFQFVEVPGNHCVHMSEPQHVASIISSFLQCTHMLPAQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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