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Report for CCDS6340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6340.1 Public Homo sapiens 8 FAM83A 24 110 108 CCDS HistoryNCBI Gene:84985Re-query CCDS DB by CCDS ID:6340.1Re-query CCDS DB by GeneID:84985See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6340.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000518448.5 ENSP00000428876.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000518448.5Link to Ensembl Protein Viewer:ENSP00000428876.1Re-query CCDS DB by Nucleotide ID:ENST00000518448Re-query CCDS DB by Protein ID:ENSP00000428876
Original member Current member EBI ENST00000690554.1 ENSP00000509471.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000690554.1Link to Ensembl Protein Viewer:ENSP00000509471.1Re-query CCDS DB by Nucleotide ID:ENST00000690554Re-query CCDS DB by Protein ID:ENSP00000509471
Original member Current member NCBI NM_001394396.1 NP_001381325.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394396.1Link to Protein Sequence:NP_001381325.1Re-query CCDS DB by Nucleotide ID:NM_001394396Re-query CCDS DB by Protein ID:NP_001381325Link to BLAST:NP_001381325.1
Original member Current member NCBI NM_032899.6 NP_116288.2 Accepted alive Link to Nucleotide Sequence:NM_032899.6Link to Protein Sequence:NP_116288.2Re-query CCDS DB by Nucleotide ID:NM_032899Re-query CCDS DB by Protein ID:NP_116288Link to BLAST:NP_116288.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381325.1 434 Q86UY5-1 434 100% 0 0
NP_116288.2 434 Q86UY5-1 434 100% 0 0

Chromosomal Locations for CCDS 6340.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 123182857 123183336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123191803 123191970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123194024 123194148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123207157 123207688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGAGCCGGTCAAGGCACCTGGGCAAAATCCGGAAGCGTCTGGAAGATGTCAAGAGCCAGTGGGTCCGGC
CAGCCAGGGCTGACTTTAGTGACAACGAGAGTGCCCGGCTGGCCACGGACGCCCTCTTGGATGGGGGTTC
TGAAGCCTACTGGCGGGTGCTCAGCCAGGAAGGCGAGGTGGACTTCTTGTCCTCGGTGGAGGCCCAGTAC
ATCCAGGCCCAGGCCAGGGAGCCCCCGTGTCCCCCAGACACCCTGGGAGGGGCGGAAGCAGGCCCTAAGG
GACTGGACTCCAGCTCCCTACAGTCCGGCACCTACTTCCCTGTGGCCTCAGAGGGCAGCGAGCCGGCCCT
ACTGCACAGCTGGGCCTCAGCTGAGAAGCCCTACCTGAAGGAAAAATCCAGCGCCACTGTGTACTTCCAG
ACCGTCAAGCACAACAACATCAGAGACCTCGTCCGCCGCTGCATCACCCGGACTAGCCAGGTCCTGGTCA
TCCTGATGGATGTGTTCACGGATGTGGAGATCTTCTGTGACATTCTAGAGGCAGCCAACAAGCGTGGGGT
GTTCGTTTGTGTGCTCCTGGACCAGGGAGGTGTGAAGCTCTTCCAGGAGATGTGTGACAAAGTCCAGATC
TCTGACAGTCACCTCAAGAACATTTCCATCCGGAGTGTGGAAGGAGAGATATACTGTGCCAAGTCAGGCA
GGAAATTCGCTGGCCAAATCCGGGAGAAGTTCATCATCTCGGACTGGAGATTTGTCCTGTCTGGATCTTA
CAGCTTCACCTGGCTCTGCGGACACGTGCACCGGAACATCCTCTCCAAGTTCACAGGCCAGGCGGTGGAG
CTGTTTGACGAGGAGTTCCGCCACCTCTACGCCTCCTCCAAGCCTGTGATGGGCCTGAAGTCCCCGCGGC
TGGTCGCCCCCGTCCCGCCCGGAGCAGCCCCGGCCAATGGCCGCCTTAGCAGCAGCAGTGGCTCCGCCAG
TGACCGCACGTCCTCCAACCCCTTCAGCGGCCGCTCGGCAGGCAGCCACCCCGGTACCCGAAGTGTGTCC
GCGTCTTCAGGGCCCTGTAGCCCCGCGGCCCCACACCCGCCTCCACCGCCCCGGTTCCAGCCCCACCAAG
GCCCTTGGGGAGCCCCGAGTCCCCAGGCCCACCTCTCCCCGCGGCCCCACGACGGCCCGCCCGCCGCTGT
CTACAGCAACCTGGGGGCCTACAGGCCCACGCGGCTGCAGCTGGAGCAGCTGGGCCTGGTGCCGAGGCTG
ACTCCAACCTGGAGGCCCTTCCTGCAGGCCTCCCCTCACTTCTGA

Translation (434 aa):
MSRSRHLGKIRKRLEDVKSQWVRPARADFSDNESARLATDALLDGGSEAYWRVLSQEGEVDFLSSVEAQY
IQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGTYFPVASEGSEPALLHSWASAEKPYLKEKSSATVYFQ
TVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILEAANKRGVFVCVLLDQGGVKLFQEMCDKVQI
SDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVE
LFDEEFRHLYASSKPVMGLKSPRLVAPVPPGAAPANGRLSSSSGSASDRTSSNPFSGRSAGSHPGTRSVS
ASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLSPRPHDGPPAAVYSNLGAYRPTRLQLEQLGLVPRL
TPTWRPFLQASPHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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