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Report for CCDS6325.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6325.1 Public Homo sapiens 8 SAMD12 24 110 108 CCDS HistoryNCBI Gene:401474Re-query CCDS DB by CCDS ID:6325.1Re-query CCDS DB by GeneID:401474See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6325.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314727.9 ENSP00000314173.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314727.9Link to Ensembl Protein Viewer:ENSP00000314173.4Re-query CCDS DB by Nucleotide ID:ENST00000314727Re-query CCDS DB by Protein ID:ENSP00000314173
Original member Current member NCBI NM_207506.3 NP_997389.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207506.3Link to Protein Sequence:NP_997389.2Re-query CCDS DB by Nucleotide ID:NM_207506Re-query CCDS DB by Protein ID:NP_997389Link to BLAST:NP_997389.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997389.2 201 Q8N8I0 201 100% 0 0

Chromosomal Locations for CCDS 6325.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 118379417 118379700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118439832 118439961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118580715 118580893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118621804 118621816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGCTGTGGAAGCTCTCCACTGTGGTTTGAATCCACGGGGTATTGATCACCCTGCCCATGCTGAAGGTA
TT
AAACTGCAAATTGAAGGTGAAGGTGTGGAATCTCAATCCATTAAAAATAAAAATTTCCAGAAGGTGCC
T
GACCAGAAAGGAACTCCCAAGCGACTGCAGGCAGAAGCTGAGACGGCTAAGTCAGCTACGGTGAAGCTA
TCT
AAACCGGTGGCTCTATGGACCCAGCAGGATGTCTGCAAGTGGTTGAAGAAACATTGTCCGAATCAGT
AT
CAGATCTACAGTGAGTCATTCAAACAGCATGACATAACTGGGCGAGCCCTGCTGAGACTTACTGACAA
A
AAGCTCGAGCGAATGGGGATTGCCCAGGAGAACCTCCGGCAGCACATCTTACAACAGGTGCTCCAGCTG
AAG
GTGCGAGAAGAAGTCAGAAATCTACAGTTACTCACACAAGGTACCCTATTGCTTCCTGATGGGTGGA
TG
GATGGGGAGATTAGAAGAAAGACCACCTTACTATTAGGACAGACAGGAGTCAGGGAGAATTTGTTATT
G
TTTCTTCACAGAATTTCCATCATAGAAAATAGTATACAGATTTAA


Translation (201 aa):
MAVEALHCGLNPRGIDHPAHAEGIKLQIEGEGVESQSIKNKNFQKVPDQKGTPKRLQAEAETAKSATVKL
S
KPVALWTQQDVCKWLKKHCPNQYQIYSESFKQHDIT
GRALLRLTDKKLERMGIAQENLRQHILQQVLQL
K
VREEVRNLQLLTQGTLLLPDGWMDGEIRRKTTLLLGQTGVRENLLLFLHRISIIENSIQI




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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