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Report for CCDS6171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6171.1 Public Homo sapiens 8 CYP7A1 24 110 108 CCDS HistoryNCBI Gene:1581Re-query CCDS DB by CCDS ID:6171.1Re-query CCDS DB by GeneID:1581See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6171.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301645.4 ENSP00000301645.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301645.4Link to Ensembl Protein Viewer:ENSP00000301645.3Re-query CCDS DB by Nucleotide ID:ENST00000301645Re-query CCDS DB by Protein ID:ENSP00000301645
Original member Current member NCBI NM_000780.4 NP_000771.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000780.4Link to Protein Sequence:NP_000771.2Re-query CCDS DB by Nucleotide ID:NM_000780Re-query CCDS DB by Protein ID:NP_000771Link to BLAST:NP_000771.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000771.2 504 P22680 504 100% 0 0

Chromosomal Locations for CCDS 6171.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 58491475 58491774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 58492353 58492528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 58494506 58494636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 58496604 58497190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 58498229 58498469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 58500019 58500098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGATGACCACATCTTTGATTTGGGGGATTGCTATAGCAGCATGCTGTTGTCTATGGCTTATTCTTGGAA
TTAGGAGAAGGCAAACGGGTGAACCACCTCTAGAGAATGGATTAATTCCATACCTGGGCTGTGCTCTGCA
ATTTGGTGCCAATCCTCTTGAGTTCCTCAGAGCAAATCAAAGGAAACATGGTCATGTTTTTACCTGCAAA
CTAATGGGAAAATATGTCCATTTCATCACAAATCCCTTGTCATACCATAAGGTGTTGTGCCACGGAAAAT
ATTTTGATTGGAAAAAATTTCACTTTGCTACTTCTGCGAAGGCATTTGGGCACAGAAGCATTGACCCGAT
GGATGGAAATACCACTGAAAACATAAACGACACTTTCATCAAAACCCTGCAGGGCCATGCCTTGAATTCC
CTCACGGAAAGCATGATGGAAAACCTCCAACGTATCATGAGACCTCCAGTCTCCTCTAACTCAAAGACCG
CTGCCTGGGTGACAGAAGGGATGTATTCTTTCTGCTACCGAGTGATGTTTGAAGCTGGGTATTTAACTAT
CTTTGGCAGAGATCTTACAAGGCGGGACACACAGAAAGCACATATTCTAAACAATCTTGACAACTTCAAG
CAATTCGACAAAGTCTTTCCAGCCCTGGTAGCAGGCCTCCCCATTCACATGTTCAGGACTGCGCACAATG
CCCGGGAGAAACTGGCAGAGAGCTTGAGGCACGAGAACCTCCAAAAGAGGGAAAGCATCTCAGAACTGAT
CAGCCTGCGCATGTTTCTCAATGACACTTTGTCCACCTTTGATGATCTGGAGAAGGCCAAGACACACCTC
GTGGTCCTCTGGGCATCGCAAGCAAACACCATTCCAGCGACTTTCTGGAGTTTATTTCAAATGATTAGGA
ACCCAGAAGCAATGAAAGCAGCTACTGAAGAAGTGAAAAGAACATTAGAGAATGCTGGTCAAAAAGTCAG
CTTGGAAGGCAATCCTATTTGTTTGAGTCAAGCAGAACTGAATGACCTGCCAGTATTAGATAGTATAATC
AAGGAATCGCTGAGGCTTTCCAGTGCCTCCCTCAACATCCGGACAGCTAAGGAGGATTTCACTTTGCACC
TTGAGGACGGTTCCTACAACATCCGAAAAGATGACATCATAGCTCTTTACCCACAGTTAATGCACTTAGA
TCCAGAAATCTACCCAGACCCTTTGACTTTTAAATATGATAGGTATCTTGATGAAAACGGGAAGACAAAG
ACTACCTTCTATTGTAATGGACTCAAGTTAAAGTATTACTACATGCCCTTTGGATCGGGAGCTACAATAT
GTCCTGGAAGATTGTTCGCTATCCACGAAATCAAGCAATTTTTGATTCTGATGCTTTCTTATTTTGAATT
GGAGCTTATAGAGGGCCAAGCTAAATGTCCACCTTTGGACCAGTCCCGGGCAGGCTTGGGCATTTTGCCG
CCATTGAATGATATTGAATTTAAATATAAATTCAAGCATTTGTGA

Translation (504 aa):
MMTTSLIWGIAIAACCCLWLILGIRRRQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCK
LMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFATSAKAFGHRSIDPMDGNTTENINDTFIKTLQGHALNS
LTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEAGYLTIFGRDLTRRDTQKAHILNNLDNFK
QFDKVFPALVAGLPIHMFRTAHNAREKLAESLRHENLQKRESISELISLRMFLNDTLSTFDDLEKAKTHL
VVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSII
KESLRLSSASLNIRTAKEDFTLHLEDGSYNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTK
TTFYCNGLKLKYYYMPFGSGATICPGRLFAIHEIKQFLILMLSYFELELIEGQAKCPPLDQSRAGLGILP
PLNDIEFKYKFKHL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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