NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS60145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60145.1 Public Homo sapiens 1 LDLRAD1 24 110 108 CCDS HistoryNCBI Gene:388633Re-query CCDS DB by CCDS ID:60145.1Re-query CCDS DB by GeneID:388633See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60145.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371362.7 ENSP00000360413.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371362.7Link to Ensembl Protein Viewer:ENSP00000360413.3Re-query CCDS DB by Nucleotide ID:ENST00000371362Re-query CCDS DB by Protein ID:ENSP00000360413
Original member Current member NCBI NM_001276394.2 NP_001263323.1 Accepted alive Link to Nucleotide Sequence:NM_001276394.2Link to Protein Sequence:NP_001263323.1Re-query CCDS DB by Nucleotide ID:NM_001276394Re-query CCDS DB by Protein ID:NP_001263323Link to BLAST:NP_001263323.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263323.1 116 Q5T700-3 116 100% 0 0

Chromosomal Locations for CCDS 60145.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 54008982 54009130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54010282 54010410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54017376 54017427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54018092 54018112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (351 nt):
ATGAACAAGGTCTTCCCCCAGGGAGAGAATGGCTACACTGCTGCTGAATCCAAAGCCCACCCTGGAGGGG
AAGGAGATGTGCCCCAGAGCCTCCCCCACTTCCTTGTGGCCCACTGTGGAGACCCGGCCTCCTGGATCTA
CTCAGACCAAAAATGTGATGGCACTAACAACTGCGGGGACTGTTCAGATGAACTGAGCCCAGTAACTGTG
TGCCCACCCTGCGGCCCTGGGTGGTGGCGCTGTCCTTCAACCTTCTTCAAGTACTGCGACTGTATACCGA
GGCATCTCTGCCGCGACCATGTACAGCACTGCTCCGACTGGTCCGATGAGTATGCCTGTCCCGGACCCTG
A

Translation (116 aa):
MNKVFPQGENGYTAAESKAHPGGEGDVPQSLPHFLVAHCGDPASWIYSDQKCDGTNNCGDCSDELSPVTV
CPPCGPGWWRCPSTFFKYCDCIPRHLCRDHVQHCSDWSDEYACPGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH