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Report for CCDS59215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59215.1 Public Homo sapiens 10 ARHGAP12 24 110 108 CCDS HistoryNCBI Gene:94134Re-query CCDS DB by CCDS ID:59215.1Re-query CCDS DB by GeneID:94134See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59215.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375250.9 ENSP00000364399.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375250.9Link to Ensembl Protein Viewer:ENSP00000364399.5Re-query CCDS DB by Nucleotide ID:ENST00000375250Re-query CCDS DB by Protein ID:ENSP00000364399
Original member Current member NCBI NM_001270696.2 NP_001257625.1 Accepted alive Link to Nucleotide Sequence:NM_001270696.2Link to Protein Sequence:NP_001257625.1Re-query CCDS DB by Nucleotide ID:NM_001270696Re-query CCDS DB by Protein ID:NP_001257625Link to BLAST:NP_001257625.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257625.1 816 Q8IWW6-2 816 100% 0 0

Chromosomal Locations for CCDS 59215.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 31807658 31807832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31808649 31808751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31808994 31809128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31809230 31809307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31810649 31810747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31812707 31812823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31814259 31814361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31817788 31817886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31820387 31820488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31826304 31826385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31831739 31831800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31843461 31843586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31852517 31852597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31854066 31854206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31861395 31861658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31908172 31908855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2451 nt):
ATGAAAATGGCTGACAGAAGTGGGAAGATTATTCCAGGACAAGTGTATATTGAGGTGGAATATGATTATG
AATATGAAGCAAAGGACAGAAAGATTGTGATAAAACAAGGGGAGAGGTACATCTTGGTGAAAAAGACCAA
TGATGACTGGTGGCAAGTCAAGCCAGATGAAAACTCCAAAGCGTTTTATGTGCCAGCCCAGTATGTGAAG
GAGGTCACGCGCAAAGCTCTCATGCCACCTGTTAAGCAGGTAGCTGGTCTGCCAAATAACTCCACGAAAA
TAATGCAGAGTTTGCATCTTCAGAGATCAACAGAAAATGTGAACAAATTGCCTGAGCTTTCAAGTTTCGG
AAAGCCATCGTCATCTGTTCAAGGAACAGGTCTTATTCGTGATGCCAATCAGAATTTTGGACCCAGTTAT
AATCAAGGTCAGACTGTCAACCTAAGCCTGGACCTGACCCATAATAACGGAAAGTTTAACAATGACTCAC
ATTCTCCTAAAGTTTCCAGCCAGAATAGGACACGCTCATTTGGTCATTTTCCCGGTCCAGAGTTCTTGGA
TGTAGAGAAAACTAGCTTCTCCCAGGAACAATCTTGTGATTCCGCAGGAGAAGGCTCTGAAAGAATACAT
CAAGATTCTGAATCTGGTGATGAACTTAGCAGCAGCTCCACTGAACAGATAAGGGCAACCACACCTCCAA
ATCAAGGAAGGCCAGATTCTCCTGTCTATGCTAACCTTCAAGAACTGAAAATATCCCAGTCTGCTCTTCC
CCCACTTCCTGGGAGCCCGGCAATTCAGATTAATGGAGAATGGGAAACTCATAAAGACAGCTCAGGGCGT
TGCTATTACTATAACAGAGGGACACAGGAAAGAACTTGGAAACCTCCTCGTTGGACTCGGGATGCAAGCA
TCAGCAAAGGAGATTTCCAAAATCCAGGGGATCAAGAGCTTCTTTCATCGGAAGAAAACTACTACAGCAC
TTCTTACAGCCAGTCAGATAGTCAGTGTGGTTCTCCTCCAAGGGGTTGGTCAGAAGAGTTGGATGAACGT
GGGCATACCTTATATACCAGTGACTATACTAATGAAAAGTGGCTCAAGCATGTTGATGATCAAGGTAGAC
AATATTACTACAGTGCAGACGGATCTCGGTCAGAATGGGAATTGCCAAAGTATAATGCTTCATCCCAGCA
GCAAAGAGAAATAATTAAAAGTAGGAGCCTGGACAGGCGGCTGCAAGAACCAATAGTATTAACAAAGTGG
AGACATAGCACCATTGTATTGGACACTAATGATAAGGATCAAGAGAAATATGGATTATTAAATGTAACAA
AAATTGCTGAAAATGGGAAAAAGGTTCGAAAGAACTGGTTGTCTTCTTGGGCGGTGTTGCAGGGTTCATC
TTTACTTTTTACCAAAACTCAAGGAAGTAGCACAAGTTGGTTTGGCAGTAATCAGTCCAAACCAGAGTTC
ACAGTGGACCTCAAGGGGGCAACAATTGAGATGGCTTCAAAGGATAAATCCAGCAAAAAGAATGTATTTG
AGCTGAAAACTCGTCAAGGAACAGAACTGCTAATTCAGTCTGACAATGACACTGTTATTAATGATTGGTT
TAAAGTTCTTAGTAGTACAATCAATAATCAGGCAGTAGAAACTGATGAAGGAATTGAAGAGGAGATACCG
GATTCACCAGGAATAGAAAAGCATGATAAAGAAAAGGAACAAAAGGATCCCAAAAAGCTTCGTTCCTTTA
AAGTATCTAGCATAGATTCTTCAGAACAGAAAAAAACCAAGAAAAACTTAAAGAAGTTTCTTACACGACG
CCCCACTTTGCAAGCTGTTCGTGAAAAAGGTTATATTAAAGATCAGGTATTTGGATCCAATCTCGCTAAT
CTGTGTCAGAGAGAGAATGGCACAGTACCAAAGTTTGTGAAGTTATGTATTGAACATGTTGAAGAACATG
GTTTGGATATTGATGGGATATACAGAGTAAGTGGCAACCTCGCAGTGATCCAGAAACTAAGGTTTGCAGT
CAATCATGATGAGAAATTGGACTTGAATGACAGTAAATGGGAAGATATTCATGTCATTACTGGAGCCCTC
AAAATGTTTTTTCGAGAATTACCAGAACCTCTTTTTACATTTAATCATTTTAATGATTTTGTTAATGCAA
TTAAGCAAGAACCAAGACAGCGAGTCGCTGCTGTTAAGGACCTAATCAGACAGTTGCCAAAGCCAAACCA
AGACACAATGCAGATTCTTTTCCGACATCTCAGAAGAGTTATAGAAAATGGAGAGAAAAATCGAATGACC
TATCAGAGTATAGCAATTGTTTTTGGTCCCACTCTATTAAAACCAGAAAAAGAGACTGGTAATATAGCAG
TTCATACTGTGTACCAGAATCAGATTGTAGAATTAATTCTTCTGGAACTGAGTTCCATCTTCGGACGTTG
A

Translation (816 aa):
MKMADRSGKIIPGQVYIEVEYDYEYEAKDRKIVIKQGERYILVKKTNDDWWQVKPDENSKAFYVPAQYVK
EVTRKALMPPVKQVAGLPNNSTKIMQSLHLQRSTENVNKLPELSSFGKPSSSVQGTGLIRDANQNFGPSY
NQGQTVNLSLDLTHNNGKFNNDSHSPKVSSQNRTRSFGHFPGPEFLDVEKTSFSQEQSCDSAGEGSERIH
QDSESGDELSSSSTEQIRATTPPNQGRPDSPVYANLQELKISQSALPPLPGSPAIQINGEWETHKDSSGR
CYYYNRGTQERTWKPPRWTRDASISKGDFQNPGDQELLSSEENYYSTSYSQSDSQCGSPPRGWSEELDER
GHTLYTSDYTNEKWLKHVDDQGRQYYYSADGSRSEWELPKYNASSQQQREIIKSRSLDRRLQEPIVLTKW
RHSTIVLDTNDKDQEKYGLLNVTKIAENGKKVRKNWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEF
TVDLKGATIEMASKDKSSKKNVFELKTRQGTELLIQSDNDTVINDWFKVLSSTINNQAVETDEGIEEEIP
DSPGIEKHDKEKEQKDPKKLRSFKVSSIDSSEQKKTKKNLKKFLTRRPTLQAVREKGYIKDQVFGSNLAN
LCQRENGTVPKFVKLCIEHVEEHGLDIDGIYRVSGNLAVIQKLRFAVNHDEKLDLNDSKWEDIHVITGAL
KMFFRELPEPLFTFNHFNDFVNAIKQEPRQRVAAVKDLIRQLPKPNQDTMQILFRHLRRVIENGEKNRMT
YQSIAIVFGPTLLKPEKETGNIAVHTVYQNQIVELILLELSSIFGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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