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Report for CCDS59202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59202.1 Public Homo sapiens 1 ASCL5 24 110 108 CCDS HistoryNCBI Gene:647219Re-query CCDS DB by CCDS ID:59202.1Re-query CCDS DB by GeneID:647219See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 59202.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000449188.3 ENSP00000472681.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000449188.3Link to Ensembl Protein Viewer:ENSP00000472681.1Re-query CCDS DB by Nucleotide ID:ENST00000449188Re-query CCDS DB by Protein ID:ENSP00000472681
Original member Current member NCBI NM_001270601.2 NP_001257530.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001270601.2Link to Protein Sequence:NP_001257530.1Re-query CCDS DB by Nucleotide ID:NM_001270601Re-query CCDS DB by Protein ID:NP_001257530Link to BLAST:NP_001257530.1

Chromosomal Locations for CCDS 59202.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 201114752 201115372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGAACAATAACTTCTGCCGGGCTCTGGTGGACCGGAGGCCTCTGGGGCCCCCCAGCTGCATGCAGCTGG
GCGTCATGCCCCCTCCCCGGCAGGCGCCCCTGCCCCCCGCCGAGCCCCTGGGCAACGTGCCCTTCCTGCT
GTACCCGGGCCCAGCAGAGCCGCCCTACTACGACGCCTATGCGGGGGTGTTCCCCTACGTGCCCTTCCCC
GGCGCCTTCGGGGTCTACGAATACCCCTTCGAGCCAGCCTTCATCCAGAAGCGCAACGAGCGCGAGAGGC
AGCGAGTCAAGTGCGTCAACGAGGGCTACGCTCGCCTCCGCGGCCACCTCCCCGGCGCCCTGGCTGAGAA
GCGACTCAGCAAGGTGGAGACGCTGCGCGCCGCCATCCGCTACATAAAGTACCTGCAAGAGCTGCTGAGC
TCGGCCCCCGACGGCTCGACGCCCCCCGCTTCCCGCGGCCTCCCGGGCACCGGGCCCTGCCCCGCGCCGC
CCGCCACCCCCCGTCCCGACCGCCCTGGCGACGGCGAGGCCCGGGCGCCCTCCTCCCTGGTGCCGGAGTC
ATCCGAGTCCTCCTGCTTCTCCCCGTCGCCTTTCTTGGAGTCGGAGGAATCCTGGCATTGA

Translation (206 aa):
MNNNFCRALVDRRPLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLLYPGPAEPPYYDAYAGVFPYVPFP
GAFGVYEYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLS
SAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVPESSESSCFSPSPFLESEESWH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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