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Report for CCDS5908.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5908.1 Public Homo sapiens 7 TMEM176B 24 110 108 CCDS HistoryNCBI Gene:28959Re-query CCDS DB by CCDS ID:5908.1Re-query CCDS DB by GeneID:28959See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5908.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326442.10 ENSP00000318409.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326442.10Link to Ensembl Protein Viewer:ENSP00000318409.5Re-query CCDS DB by Nucleotide ID:ENST00000326442Re-query CCDS DB by Protein ID:ENSP00000318409
Original member Current member EBI ENST00000429904.6 ENSP00000397810.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429904.6Link to Ensembl Protein Viewer:ENSP00000397810.2Re-query CCDS DB by Nucleotide ID:ENST00000429904Re-query CCDS DB by Protein ID:ENSP00000397810
Original member Current member EBI ENST00000447204.6 ENSP00000410269.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447204.6Link to Ensembl Protein Viewer:ENSP00000410269.2Re-query CCDS DB by Nucleotide ID:ENST00000447204Re-query CCDS DB by Protein ID:ENSP00000410269
Original member Current member EBI ENST00000434545.5 ENSP00000413531.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000434545.5Link to Ensembl Protein Viewer:ENSP00000413531.1Re-query CCDS DB by Nucleotide ID:ENST00000434545Re-query CCDS DB by Protein ID:ENSP00000413531
Original member Current member EBI ENST00000492607.5 ENSP00000419258.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000492607.5Link to Ensembl Protein Viewer:ENSP00000419258.1Re-query CCDS DB by Nucleotide ID:ENST00000492607Re-query CCDS DB by Protein ID:ENSP00000419258
Original member Current member NCBI NM_001101311.2 NP_001094781.1 Accepted alive Link to Nucleotide Sequence:NM_001101311.2Link to Protein Sequence:NP_001094781.1Re-query CCDS DB by Nucleotide ID:NM_001101311Re-query CCDS DB by Protein ID:NP_001094781Link to BLAST:NP_001094781.1
Original member Current member NCBI NM_001101312.2 NP_001094782.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001101312.2Link to Protein Sequence:NP_001094782.1Re-query CCDS DB by Nucleotide ID:NM_001101312Re-query CCDS DB by Protein ID:NP_001094782Link to BLAST:NP_001094782.1
Original member Current member NCBI NM_014020.4 NP_054739.3 Accepted alive Link to Nucleotide Sequence:NM_014020.4Link to Protein Sequence:NP_054739.3Re-query CCDS DB by Nucleotide ID:NM_014020Re-query CCDS DB by Protein ID:NP_054739Link to BLAST:NP_054739.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094781.1 270 Q3YBM2-1 270 100% 0 0
NP_001094782.1 270 Q3YBM2-1 270 100% 0 0
NP_054739.3 270 Q3YBM2-1 270 100% 0 0

Chromosomal Locations for CCDS 5908.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 150791531 150791623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 150792056 150792175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 150793088 150793315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 150793544 150793600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 150793961 150794071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 150796366 150796569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGACGCAAAACACGGTGATTGTGAATGGAGTTGCTATGGCCTCTAGGCCATCCCAGCCCACCCACGTCA
ACGTCCACATCCACCAGGAGTCAGCTTTGACACAACTGCTGAAAGCTGGAGGTTCTCTGAAGAAGTTTCT
TTTTCACCCTGGGGACACTGTGCCTTCCACAGCCAGGATTGGTTATGAGCAGCTGGCTCTAGGGGTGACT
CAGATATTGCTGGGGGTTGTGAGTTGTGTTCTTGGAGTGTGTCTCAGCTTGGGGCCCTGGACTGTGCTGA
GTGCCTCAGGCTGTGCCTTCTGGGCGGGGTCTGTGGTGATCGCAGCAGGAGCTGGGGCCATTGTCCATGA
GAAGCACCCGGGCAAACTTGCTGGCTATATATCCAGCCTGCTCACCCTGGCAGGCTTTGCTACAGCTATG
GCTGCTGTTGTCCTCTGCGTGAATAGCTTCATCTGGCAAACTGAACCCTTTTTATACATCGACACTGTGT
GTGATCGCTCAGACCCTGTCTTCCCTACCACTGGGTACAGATGGATGCGGCGAAGTCAAGAGAACCAATG
GCAGAAGGAGGAGTGTAGAGCTTACATGCAGATGCTGAGGAAGTTGTTCACAGCAATCCGTGCCCTGTTC
CTGGCTGTCTGTGTCTTGAAGGTCATTGTGTCCTTGGTTTCCTTGGGAGTAGGTCTTCGAAACTTGTGTG
GCCAGAGCTCCCAGCCCCTGAATGAGGAAGGATCAGAGAAGAGGCTACTGGGGGAGAATTCAGTGCCCCC
TTCGCCCTCTAGGGAGCAGACCTCCACTGCCATTGTCCTGTGA

Translation (270 aa):
MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARIGYEQLALGVT
QILLGVVSCVLGVCLSLGPWTVLSASGCAFWAGSVVIAAGAGAIVHEKHPGKLAGYISSLLTLAGFATAM
AAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMRRSQENQWQKEECRAYMQMLRKLFTAIRALF
LAVCVLKVIVSLVSLGVGLRNLCGQSSQPLNEEGSEKRLLGENSVPPSPSREQTSTAIVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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