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Report for CCDS588.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
588.2 Public Homo sapiens 1 CDCP2 24 110 108 CCDS HistoryNCBI Gene:200008Re-query CCDS DB by CCDS ID:588.2Re-query CCDS DB by GeneID:200008See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 588.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371330.1 ENSP00000360381.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371330.1Link to Ensembl Protein Viewer:ENSP00000360381.1Re-query CCDS DB by Nucleotide ID:ENST00000371330Re-query CCDS DB by Protein ID:ENSP00000360381
Original member Current member NCBI NM_201546.5 NP_963840.2 Accepted alive Link to Nucleotide Sequence:NM_201546.5Link to Protein Sequence:NP_963840.2Re-query CCDS DB by Nucleotide ID:NM_201546Re-query CCDS DB by Protein ID:NP_963840Link to BLAST:NP_963840.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_963840.2 449 Q5VXM1-1 449 100% 0 0

Chromosomal Locations for CCDS 588.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 54139520 54140106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54141098 54141433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54144466 54144813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54152844 54152922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGCTGGCAGAGTGGGGGGCTTGCCTGCTGCTGGCAGTGGCACTGCTGGGCCCAGGGCTCCAGGCCCAAG
CCATGGAAGGTGTCAAATGTGGGGGTGTGCTCTCAGCACCTTCTGGAAACTTCTCCAGCCCCAACTTCCC
TAGACTGTACCCCTACAACACAGAGTGCAGCTGGCTGATCGTGGTGGCCGAGGGATCCTCGGTGCTGCTC
ACCTTCCATGCCTTTGACCTAGAGTACCACGACACCTGCAGCTTCGACTTTCTGGAGATCTACAATGGGG
CCTCACCAGACAAGGGCAACCTGCTGGGGAGGTTCTGCGGCAAGGTGCCCCCGCCGCCCTTCACCTCCTC
CTGGCATGTCATGTCTGTCATCTTCCACTCGGACAAGCATGTGGCCAGCCATGGCTTTTCTGCGGGCTAC
CAGAAAGATGTGTGTGGCGGCGTCCTGACTGGCCTGTCAGGGGTCCTCACCAGTCCTGAGTATCCCAACA
ACTACCCGAACAGCATGGAGTGCCACTGGGTGATCCGGGCCGCTGGCCCTGCCCACGTCAAGCTGGTGTT
CGTGGACTTCCAGGTGGAGGGCAATGAAGAGTGCACCTATGACTACGTGGCTGTGCTTGGGGGGCCTGGC
CCCACCCGTGGGCACCACTACTGTGGCAGCACCAGGCCCCCCACCCTCGTGTCTCTGGGCCACGAACTGC
AGGTGGTCTTCAAGTCCGACTTCAACATCGGAGGCCGTGGCTTCAAGGCCTACTACTTCTCAGGAGAATG
CCAGGAGGTATACATGGCCATGCGGGGCAACTTCTCCAGCCCACAGTACCCCAGCTCCTACCCCAACAAC
ATCCGCTGCCACTGGACCATCCGCCTGCCCCCGGGCTACCAGGTCAAGGTGTTCTTCCTGGACCTGGACC
TGGAGGAGCCCAACAGCCTGACCAAGACCTGTGACTTTGACCATCTGGCGGCCTTCGATGGGGCCAGCGA
GGAGGCACCCCTGCTGGGGAATTGGTGTGGACACCACCTGCCACCACCCGTGACCTCAAGCCACAACCAG
CTTCTGCTTCTGCTGCACACAGACCGCAGCACCACCCGCAGGGGCTTCTCTGTGGCCTACATCGGAGGTC
AGCTGGGCTGTGGGAGTGGGTCCACTGAGGGCGAAGGGGAGGCTTTGCAGCCTCAGTCTTTGCAGTCTCC
TTCCTCCATCCCACCAGTTTGTCCTGCCCCCCCCATGAATGGTCTTCTCCAGCTCCTTCTCCATTGGCTA
CACCCTTGCCCACTCTCGGGACCCCTAAGACTGGACGGTACGGCTCCCGCTTGTTTCCACTATTGCAGAG
CCTCCTTCCCCAGCTTCTAA

Translation (449 aa):
MLAEWGACLLLAVALLGPGLQAQAMEGVKCGGVLSAPSGNFSSPNFPRLYPYNTECSWLIVVAEGSSVLL
TFHAFDLEYHDTCSFDFLEIYNGASPDKGNLLGRFCGKVPPPPFTSSWHVMSVIFHSDKHVASHGFSAGY
QKDVCGGVLTGLSGVLTSPEYPNNYPNSMECHWVIRAAGPAHVKLVFVDFQVEGNEECTYDYVAVLGGPG
PTRGHHYCGSTRPPTLVSLGHELQVVFKSDFNIGGRGFKAYYFSGECQEVYMAMRGNFSSPQYPSSYPNN
IRCHWTIRLPPGYQVKVFFLDLDLEEPNSLTKTCDFDHLAAFDGASEEAPLLGNWCGHHLPPPVTSSHNQ
LLLLLHTDRSTTRRGFSVAYIGGQLGCGSGSTEGEGEALQPQSLQSPSSIPPVCPAPPMNGLLQLLLHWL
HPCPLSGPLRLDGTAPACFHYCRASFPSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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