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Report for CCDS58601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58601.1 Public Homo sapiens 17 SRP68 24 110 108 CCDS HistoryNCBI Gene:6730Re-query CCDS DB by CCDS ID:58601.1Re-query CCDS DB by GeneID:6730See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58601.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539137.5 ENSP00000446136.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539137.5Link to Ensembl Protein Viewer:ENSP00000446136.1Re-query CCDS DB by Nucleotide ID:ENST00000539137Re-query CCDS DB by Protein ID:ENSP00000446136
Original member Current member NCBI NM_001260502.2 NP_001247431.1 Accepted alive Link to Nucleotide Sequence:NM_001260502.2Link to Protein Sequence:NP_001247431.1Re-query CCDS DB by Nucleotide ID:NM_001260502Re-query CCDS DB by Protein ID:NP_001247431Link to BLAST:NP_001247431.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001247431.1 589 Q9UHB9-4 589 100% 0 0

Chromosomal Locations for CCDS 58601.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 76039706 76039933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76040419 76040474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76040903 76040978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76043829 76043958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76045292 76045386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76046038 76046194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76047906 76047970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76050428 76050526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76057403 76057543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76060308 76060390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76061110 76061219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76061492 76061574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76063976 76064171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76070378 76070444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76072308 76072491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGGCTGCTGAGAAGCAGGTCCCAGGCGGCGGCGGCGGCGGCGGCAGTGGCGGCGGCGGTGGCAGTGGCG
GCGGCGGTAGCGGCGGTGGACGTGGTGCCGGAGGGGAAGAAAATAAAGAAAACGAACGCCCTTCGGCCGG
ATCGAAGGCAAACAAAGAATTTGGGGATAGCCTGAGTTTGGAGATTCTTCAGATTATTAAGGAATCCCAG
CAGCAGCATGGTTTACGGCATGGAGATTTTCAGAGGTACAGATACTTGCTTCTGGTTCTGATGGATGCTG
AAAGAGCCTGGAGCTACGCCATGCAGCTGAAACAGGAAGCCAACACTGAACCCCGAAAACGGTTTCACTT
GTTATCTCGCCTACGCAAAGCCGTGAAGCATGCAGAGGAATTGGAACGCTTGTGTGAGAGCAATCGCGTG
GATGCCAAGACCAAATTAGAGGCTCAGGCTTACACAGCTTACCTCTCAGGAATGCTACGTTTTGAACATC
AAGAATGGAAAGCTGCCATTGAGGCTTTTAACAAATGCAAAACTATCTATGAGAAGCTAGCCAGTGCTTT
CACAGAGGAGCAGGCTGTGCTGTATAACCAACGTGTGGAAGAGATTTCACCCAACATCCGCTATTGTGCA
TATAATATTGGGGACCAGTCAGCCATCAATGAACTCATGCAGATGAGATTGAGGTCTGGGGGCACTGAGG
GTCTCTTGGCTGAAAAATTGGAGGCTTTGATCACTCAGACTCGAGCCAAACAGGCAGCTACCATGAGTGA
AGTGGAGTGGAGAGGGAGAACGGTTCCAGTGAAGATTGACAAAGTGCGCATTTTCTTATTAGGACTGGCT
GATAACGAAGCAGCTATTGTCCAGGCTGAAAGCGAAGAAACTAAGGAGCGCCTGTTTGAATCAATGCTCA
GCGAGTGTCGGGACGCCATCCAGGTGGTTCGGGAGGAGCTCAAGCCAGATCAGAAACAGAGAGATTATAT
CCTTGAAGGAGAGCCAGGGAAGGTGTCTAATCTTCAATACTTGCATAGCTACCTGACTTACATCAAGCTA
TCAACGGCAATCAAGCGTAATGAGAACATGGCCAAAGGTCTGCAGAGGGCTCTGCTGCAGCAGCAGCCAG
AGGATGACAGCAAGCGCTCACCCCGGCCCCAGGACCTGATCCGACTCTATGACATCATCTTACAGAATCT
GGTGGAATTGCTCCAGCTTCCTGGTTTAGAGGAAGACAAAGCCTTCCAGAAAGAGATAGGCCTCAAGACT
CTGGTGTTCAAAGCTTACAGGTGTTTTTTCATTGCTCAGTCCTATGTGCTGGTGAAGAAGTGGAGCGAAG
CCCTTGTCCTGTATGACAGAGTCCTGAAATATGCAAATGAAGTAAATTCTGATGCTGGCGCCTTCAAGAA
CAGCCTAAAGGACCTGCCTGATGTGCAAGAGCTCATCACTCAAGTGCGGTCAGAGAAGTGCTCCCTGCAG
GCCGCAGCCATCCTTGATGCAAACGACGCTCATCAAACAGAGACCTCCTCCTCCCAAGTCAAGGACAATA
AGCCTCTGGTTGAACGGTTTGAGACATTCTGCCTGGACCCTTCCCTTGTCACCAAGCAAGCCAACCTTGT
GCACTTCCCACCAGGCTTCCAGCCCATTCCCTGCAAGCCTTTGTTCTTTGACCTGGCCCTCAACCATGTG
GCTTTCCCACCCCTTGAGGACAAGTTGGAACAGAAGACCAAGAGTGGCCTCACTGGATACATCAAGGGCA
TCTTTGGATTCAGGAGCTAA

Translation (589 aa):
MAAEKQVPGGGGGGGSGGGGGSGGGGSGGGRGAGGEENKENERPSAGSKANKEFGDSLSLEILQIIKESQ
QQHGLRHGDFQRYRYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRV
DAKTKLEAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCA
YNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGRTVPVKIDKVRIFLLGLA
DNEAAIVQAESEETKERLFESMLSECRDAIQVVREELKPDQKQRDYILEGEPGKVSNLQYLHSYLTYIKL
STAIKRNENMAKGLQRALLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQLPGLEEDKAFQKEIGLKT
LVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFKNSLKDLPDVQELITQVRSEKCSLQ
AAAILDANDAHQTETSSSQVKDNKPLVERFETFCLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHV
AFPPLEDKLEQKTKSGLTGYIKGIFGFRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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