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Report for CCDS58583.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58583.1 Public Homo sapiens 17 GDPD1 24 110 108 CCDS HistoryNCBI Gene:284161Re-query CCDS DB by CCDS ID:58583.1Re-query CCDS DB by GeneID:284161See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58583.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000581140.5 ENSP00000463273.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000581140.5Link to Ensembl Protein Viewer:ENSP00000463273.1Re-query CCDS DB by Nucleotide ID:ENST00000581140Re-query CCDS DB by Protein ID:ENSP00000463273
Original member Current member NCBI NM_001165993.2 NP_001159465.1 Accepted alive Link to Nucleotide Sequence:NM_001165993.2Link to Protein Sequence:NP_001159465.1Re-query CCDS DB by Nucleotide ID:NM_001165993Re-query CCDS DB by Protein ID:NP_001159465Link to BLAST:NP_001159465.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159465.1 289 Q8N9F7-3 289 100% 0 0

Chromosomal Locations for CCDS 58583.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 59220610 59220751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59234492 59234534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59245414 59245549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59248740 59248785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59257122 59257240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59257751 59257840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59267041 59267174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59270936 59270995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59272785 59272805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59275120 59275198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGTCGTCCACTGCGGCTTTTTACCTTCTCTCTACGCTAGGAGGATACTTGGTGACCTCATTCTTGTTGC
TTAAATACCCGACCTTGCTGCACCAGAGAAAGAAGCAGCGATTCCTCAGTAAACACATCTCTCACCGCGG
AGGTGCTGGAGAAAATTTGGAGAATACAATGGCAGCCTTTCAGCATGCGGTTAAAATCGGAACTGATATG
CTAGAATTGGACTGCCATATCACAAAAGATGAACAAGTTGTAGTGTCACATGATGAGAATCTAAAGAGAG
CAACTGGGGTCAATGTAAACATCTCTGATCTCAAATACTGTGAGCTCCCACCTTACCTTGGCAAACTGGA
TGTCTCATTTCAAAGAGCATGCCAGTGTGAAGGAAAAGATAACCGAATTCCATTACTGAAGGAAGTTTTT
GAGGCCTTTCCTAACACTCCCATTAACATCGATATCAAAGTCAACAACAATGTGCTGATTAAGAAGGTTT
CAGAGTTGGTGAAGCGGTATAATCGAGAACACTTAACAGTGTGGGGTAATGCCAATTATGAAATTGTAGA
AAAGTGCTACAAAGAGAATTCAGATATTCCTATACTCTTCAGTCTACAACGTGTCCTGCTCATTCTTGGC
CTTTTCTTCACTGGCCTCTTGCCCTTTGTGCCCATTCGAGAACAGTTTTTTGAAATCCCAATGCCTTCTA
TTATACTGAAGCTAAAAGAACCACACACCATGTCCAGAAGTCAAAAGTTTCTCATCTGGCTTTCTGATCT
CTTACTAATGAGGAAAGCTTTGTTTGAACCACTGCACCCGGCCAGTAAAAGAAATTTTGAAGGCCATTGC
AGCTATTTGGTAGTGTCTTGTTATTTCTAG

Translation (289 aa):
MSSTAAFYLLSTLGGYLVTSFLLLKYPTLLHQRKKQRFLSKHISHRGGAGENLENTMAAFQHAVKIGTDM
LELDCHITKDEQVVVSHDENLKRATGVNVNISDLKYCELPPYLGKLDVSFQRACQCEGKDNRIPLLKEVF
EAFPNTPINIDIKVNNNVLIKKVSELVKRYNREHLTVWGNANYEIVEKCYKENSDIPILFSLQRVLLILG
LFFTGLLPFVPIREQFFEIPMPSIILKLKEPHTMSRSQKFLIWLSDLLLMRKALFEPLHPASKRNFEGHC
SYLVVSCYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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