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Report for CCDS58503.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58503.3 Public Homo sapiens 17 PELP1 24 110 108 CCDS HistoryNCBI Gene:27043Re-query CCDS DB by CCDS ID:58503.3Re-query CCDS DB by GeneID:27043See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 58503.2
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data, and by conservation in primates.

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 58503.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000572293.7 ENSP00000460300.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000572293.7Link to Ensembl Protein Viewer:ENSP00000460300.2Re-query CCDS DB by Nucleotide ID:ENST00000572293Re-query CCDS DB by Protein ID:ENSP00000460300
Original member Current member EBI ENST00000574876.5 ENSP00000461625.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000574876.5Link to Ensembl Protein Viewer:ENSP00000461625.1Re-query CCDS DB by Nucleotide ID:ENST00000574876Re-query CCDS DB by Protein ID:ENSP00000461625
Original member Current member NCBI NM_014389.3 NP_055204.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014389.3Link to Protein Sequence:NP_055204.4Re-query CCDS DB by Nucleotide ID:NM_014389Re-query CCDS DB by Protein ID:NP_055204Link to BLAST:NP_055204.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055204.4 1130 Q8IZL8 1130 100% 0 0

Chromosomal Locations for CCDS 58503.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 4671439 4671531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4671691 4673145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4673250 4673456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4673619 4673674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4674510 4674669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4674809 4674956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4675079 4675195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4675274 4675362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4675797 4675884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4676036 4676162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4676357 4676507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4676753 4676812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4682502 4682573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4682803 4682952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4690888 4690993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4691378 4691442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4703863 4704111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3393 nt):
ATGGCGGCAGCCGTTCTGAGTGGGCCCTCTGCGGGCTCCGCGGCTGGGGTTCCTGGCGGGACCGGGGGTC
TCTCGGCAGTGAGCTCGGGCCCGCGGCTCCGCCTGCTGCTGCTGGAGAGTGTTTCTGGTTTGCTGCAACC
TCGAACGGGGTCTGCCGTTGCTCCGGTGCATCCCCCAAACCGCTCGGCCCCACATTTGCCCGGGCTCATG
TGCCTATTGCGGCTGCATGGGTCGGTGGGCGGGGCCCAGAACCTTTCAGCTCTTGGGGCATTGGTGAGTC
TCAGTAATGCACGTCTCAGTTCCATCAAAACTCGGTTTGAGGGCCTGTGTCTGCTGTCCCTGCTGGTAGG
GGAGAGCCCCACAGAGCTATTCCAGCAGCACTGTGTGTCTTGGCTTCGGAGCATTCAGCAGGTGTTACAG
ACCCAGGACCCGCCTGCCACAATGGAGCTGGCCGTGGCTGTCCTGAGGGACCTCCTCCGATATGCAGCCC
AGCTGCCTGCACTGTTCCGGGACATCTCCATGAACCACCTCCCTGGCCTTCTCACCTCCCTGCTGGGCCT
CAGGCCAGAGTGTGAGCAGTCAGCATTGGAAGGAATGAAGGCTTGTATGACCTATTTCCCTCGGGCTTGT
GGTTCTCTCAAAGGCAAGCTGGCCTCATTTTTTCTGTCTAGGGTGGATGCCTTGAGCCCTCAGCTCCAAC
AGTTGGCCTGTGAGTGTTATTCCCGGCTGCCCTCTTTAGGGGCTGGCTTTTCCCAAGGCCTGAAGCACAC
CGAGAGCTGGGAGCAGGAGCTACACAGTCTGCTGGCCTCACTGCACACCCTGCTGGGGGCCCTGTACGAG
GGAGCAGAGACTGCTCCTGTGCAGAATGAAGGCCCTGGGGTGGAGATGCTGCTGTCCTCAGAAGATGGTG
ATGCCCATGTCCTTCTCCAGCTTCGGCAGAGGTTTTCGGGACTGGCCCGCTGCCTAGGGCTCATGCTCAG
CTCTGAGTTTGGAGCTCCCGTGTCCGTCCCTGTGCAGGAAATCCTGGATTTCATCTGCCGGACCCTCAGC
GTCAGTAGCAAGAATATTAGCTTGCATGGAGATGGTCCCCTGCGGCTGCTGCTGCTGCCCTCTATCCACC
TTGAGGCCTTGGACCTGCTGTCTGCACTCATCCTCGCGTGTGGAAGCCGGCTCTTGCGCTTTGGGATCCT
GATCGGCCGCCTGCTTCCCCAGGTCCTCAATTCCTGGAGCATCGGTAGAGATTCCCTCTCTCCAGGCCAG
GAGAGGCCTTACAGCACGGTTCGGACCAAGGTGTATGCGATATTAGAGCTGTGGGTGCAGGTTTGTGGGG
CCTCGGCGGGAATGCTTCAGGGAGGAGCCTCTGGAGAGGCCCTGCTCACCCACCTGCTCAGCGACATCTC
CCCGCCAGCTGATGCCCTTAAGCTGCGTAGCCCGCGGGGGAGCCCTGATGGGAGTTTGCAGACTGGGAAG
CCTAGCGCCCCCAAGAAGCTAAAGCTGGATGTGGGGGAAGCTATGGCCCCGCCAAGCCACCGGAAAGGGG
ATAGCAATGCCAACAGCGACGTGTGTGCGGCTGCACTCAGAGGCCTCAGCCGGACCATCCTCATGTGTGG
GCCTCTCATCAAGGAGGAGACTCACAGGAGACTGCATGACCTGGTCCTCCCCCTGGTCATGGGTGTACAG
CAGGGTGAGGTCCTAGGCAGCTCCCCGTACACGAGCTCCCGCTGCCGCCGTGAACTCTACTGCCTGCTGC
TGGCGCTGCTGCTGGCCCCGTCTCCTCGCTGCCCACCTCCTCTTGCCTGTGCCCTGCAAGCCTTCTCCCT
CGGCCAGCGAGAAGATAGCCTTGAGGTCTCCTCTTTCTGCTCAGAAGCACTGGTGACCTGTGCTGCTCTG
ACCCACCCCCGGGTTCCTCCCCTGCAGCCCATGGGCCCCACCTGCCCCACACCTGCTCCAGTTCCCCCTC
CTGAGGCCCCATCGCCCTTCAGGGCCCCACCGTTCCATCCTCCGGGCCCCATGCCCTCAGTGGGCTCCAT
GCCCTCAGCAGGCCCCATGCCTTCAGCAGGCCCCATGCCCTCAGCAGGCCCTGTGCCCTCGGCACGCCCT
GGACCTCCCACCACAGCCAACCACCTAGGCCTTTCTGTCCCAGGCCTAGTGTCTGTCCCTCCCCGGCTTC
TTCCTGGCCCTGAGAACCACCGGGCAGGCTCAAATGAGGACCCCATCCTTGCCCCTAGTGGGACTCCCCC
ACCTACTATACCCCCAGATGAAACTTTTGGGGGGAGAGTGCCCAGACCAGCCTTTGTCCACTATGACAAG
GAGGAGGCATCTGATGTGGAGATCTCCTTGGAAAGTGACTCTGATGACAGCGTGGTGATCGTGCCCGAGG
GGCTTCCCCCCCTGCCACCCCCACCACCCTCAGGTGCCACACCACCCCCTATAGCCCCCACTGGGCCACC
AACAGCCTCCCCTCCTGTGCCAGCGAAGGAGGAGCCTGAAGAACTTCCTGCAGCCCCAGGGCCTCTCCCG
CCACCCCCACCTCCGCCGCCGCCTGTTCCTGGTCCTGTGACGCTCCCTCCACCCCAGTTGGTCCCTGAAG
GGACTCCTGGTGGGGGAGGACCCCCAGCCCTGGAAGAGGATTTGACAGTTATTAATATCAACAGCAGTGA
TGAAGAGGAGGAGGAAGAGGAAGAAGAGGAAGAAGAAGAAGAGGAAGAAGAGGAAGAGGAGGAAGACTTT
GAGGAAGAGGAAGAGGATGAAGAGGAATATTTTGAAGAGGAAGAAGAGGAGGAAGAAGAGTTTGAGGAAG
AATTTGAGGAAGAAGAAGGTGAGTTAGAGGAAGAAGAAGAAGAGGAGGATGAGGAGGAGGAAGAAGAACT
GGAAGAGGTGGAAGACCTGGAGTTTGGCACAGCAGGAGGGGAGGTAGAAGAAGGTGCACCTCCACCCCCA
ACCCTGCCTCCAGCTCTGCCTCCCCCTGAGTCTCCCCCAAAGGTGCAGCCAGAACCCGAACCTGAACCCG
GGCTGCTTTTGGAAGTGGAGGAGCCAGGGACGGAGGAGGAGCGTGGGGCTGACACAGCTCCCACCCTGGC
CCCTGAAGCGCTCCCCTCCCAGGGAGAGGTGGAGAGGGAAGGGGAAAGCCCTGCGGCAGGGCCCCCTCCC
CAGGAGCTTGTTGAAGAAGAGCCCTCTGCTCCCCCAACCCTGTTGGAAGAGGAGACTGAGGATGGGAGTG
ACAAGGTGCAGCCCCCACCAGAGACACCTGCAGAAGAAGAGATGGAGACAGAGACAGAGGCCGAAGCTCT
CCAGGAAAAGGAGCAGGATGACACAGCTGCCATGCTGGCCGACTTCATCGATTGTCCCCCTGATGATGAG
AAGCCACCACCTCCCACAGAGCCTGACTCCTAG

Translation (1130 aa):
MAAAVLSGPSAGSAAGVPGGTGGLSAVSSGPRLRLLLLESVSGLLQPRTGSAVAPVHPPNRSAPHLPGLM
CLLRLHGSVGGAQNLSALGALVSLSNARLSSIKTRFEGLCLLSLLVGESPTELFQQHCVSWLRSIQQVLQ
TQDPPATMELAVAVLRDLLRYAAQLPALFRDISMNHLPGLLTSLLGLRPECEQSALEGMKACMTYFPRAC
GSLKGKLASFFLSRVDALSPQLQQLACECYSRLPSLGAGFSQGLKHTESWEQELHSLLASLHTLLGALYE
GAETAPVQNEGPGVEMLLSSEDGDAHVLLQLRQRFSGLARCLGLMLSSEFGAPVSVPVQEILDFICRTLS
VSSKNISLHGDGPLRLLLLPSIHLEALDLLSALILACGSRLLRFGILIGRLLPQVLNSWSIGRDSLSPGQ
ERPYSTVRTKVYAILELWVQVCGASAGMLQGGASGEALLTHLLSDISPPADALKLRSPRGSPDGSLQTGK
PSAPKKLKLDVGEAMAPPSHRKGDSNANSDVCAAALRGLSRTILMCGPLIKEETHRRLHDLVLPLVMGVQ
QGEVLGSSPYTSSRCRRELYCLLLALLLAPSPRCPPPLACALQAFSLGQREDSLEVSSFCSEALVTCAAL
THPRVPPLQPMGPTCPTPAPVPPPEAPSPFRAPPFHPPGPMPSVGSMPSAGPMPSAGPMPSAGPVPSARP
GPPTTANHLGLSVPGLVSVPPRLLPGPENHRAGSNEDPILAPSGTPPPTIPPDETFGGRVPRPAFVHYDK
EEASDVEISLESDSDDSVVIVPEGLPPLPPPPPSGATPPPIAPTGPPTASPPVPAKEEPEELPAAPGPLP
PPPPPPPPVPGPVTLPPPQLVPEGTPGGGGPPALEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDF
EEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEEDEEEEEELEEVEDLEFGTAGGEVEEGAPPPP
TLPPALPPPESPPKVQPEPEPEPGLLLEVEEPGTEEERGADTAPTLAPEALPSQGEVEREGESPAAGPPP
QELVEEEPSAPPTLLEEETEDGSDKVQPPPETPAEEEMETETEAEALQEKEQDDTAAMLADFIDCPPDDE
KPPPPTEPDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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