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Report for CCDS58360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58360.1 Public Homo sapiens 15 SERINC4 24 110 108 CCDS HistoryNCBI Gene:619189Re-query CCDS DB by CCDS ID:58360.1Re-query CCDS DB by GeneID:619189See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58360.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319327.7 ENSP00000319796.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319327.7Link to Ensembl Protein Viewer:ENSP00000319796.6Re-query CCDS DB by Nucleotide ID:ENST00000319327Re-query CCDS DB by Protein ID:ENSP00000319796
Original member Current member NCBI NM_001258031.2 NP_001244960.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001258031.2Link to Protein Sequence:NP_001244960.1Re-query CCDS DB by Nucleotide ID:NM_001258031Re-query CCDS DB by Protein ID:NP_001244960Link to BLAST:NP_001244960.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001244960.1 518 A6NH21-1 518 100% 0 0

Chromosomal Locations for CCDS 58360.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 43795000 43795213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43795388 43795541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43795688 43795736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43796155 43796227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43796616 43796742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43796845 43796940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43797145 43797356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43797920 43798013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43798425 43798504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43798959 43799137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43799310 43799486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43799885 43799986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGGTGGGTGCCAAGGCCGGCCCCAGCCCCGGCACCTCCCTGGGCCTGGCACAGCAGCACAGCGGAGGCA
GCAGTGTCCTAGTGAAAAGTCCCTTCTGTCAGGTGTGCTGCTGTGGGCCTGCTCCTTGTGCCAGCTGCTG
CCACTCTAGGTGGCCCTCTCTCACCGCATCCACTTGCAGCCGCCTGTTCTACATCCTCCTCCATGTGGGG
GCCTCAGCAATCTGCTGCCTCCTGCTGTCAAGGACAGTAGTGGAAAGGGTGTGGGGCAAGACACACAGGA
TCCAGATGCCCTCGGGGTTGTGTGCCCACCTGTTTGGCCTCTCTGACTGTCCAGTGCTCAGTGGCTCTGG
GGCTGTGTACCGAGTATGTGCAGGAACCGCCACCTTCCACCTGCTGCAGGCTGTGTTGCTGGTCCACCTC
CACTCCCCCACCAGCCCGCGGGCACAGCTGCATAATAGCTTCTGGCTCCTCAAGCTGCTGTTCCTGTTAG
GTCTCTGTGCTATTGCCTTCTGCATTCCTGATGAGCATCTCTTCCCAGCATGGCATTACATTGGCATCTG
TGGAGGCTTTGCATTCATCCTACTGCAGTTGGTGCTTATTACAGCTTTTGCCCATTCCTGGAACAAGAAC
TGGCAGACAGGTGCAGCTCAAGACTGTAGCTGGTTCCTGGCTGTCCTGCTGGCCACCCTAGGATTCTACA
GCATGGCAGGTGTGGGAGCTGTGCTCCTATTCCACTATTATACACACCCAGCTGGCTGCCTGCTTAACAA
GATGCTCCTCAGTCTGCACCTTTGCTTCTGTGGCCTCATCTCCTTCCTCTCCATCGCTCCTTGCATCCGC
CTCAAGCAACCCCGCTCTGGCCTCCTACAAGCTTCTGTCATCAGCTGCTATATCATGTATCTGACTTTCT
CTGCACTGTCCAGCCGTCCTCCAGAGAGAGTAATCCTTCAAGGACAGAATCACACCCTGTGCCTGCCTGG
CCTGAGTAAAATGGAACCCCAAACACCAGATATCTCTCTAGCAATGCTGAGTGCTAGCATCATGTATGCT
TGTGTGCTTTTTGCTTGCAATGAGGCCTCCTACCTGGCTGAGGTATTTGGACCCCTGTGGATTGTCAAGG
TTTACAGCTATGAGTTTCAGAAGCCCTCACTGTGTTTCTGCTGCCCTGAAACAGTGGAGGCAGACAAAGG
GCAAAGGGGTGGGGCTGCGAGGCCAGCTGACCAAGAAACCCCTCCAGCTCCTCCAGTCCAAGTCCAGCAT
CTTTCCTACAACTATTCTGCCTTCCACTTCGTCTTCTTCCTTGCCTCACTCTATGTCATGGTTACCCTTA
CCAACTGGTTCAGCTATGAGGGAGCAGAACTGGAAAAGACCTTCATCAAGGGTAGCTGGGCCACCTTCTG
GGTCAAGGTTGCCTCATGCTGGGCCTGCGTACTCCTCTATCTGGGGCTGTTACTGGCACCACTCTGTTGG
CCCCCCACCCAGAAACCCCAGCCCCTTATCTTGAGGCGCCGCCGCCACCGCATCATATCCCCAGATAACA
AATATCCTCCAGTCTAA

Translation (518 aa):
MVGAKAGPSPGTSLGLAQQHSGGSSVLVKSPFCQVCCCGPAPCASCCHSRWPSLTASTCSRLFYILLHVG
ASAICCLLLSRTVVERVWGKTHRIQMPSGLCAHLFGLSDCPVLSGSGAVYRVCAGTATFHLLQAVLLVHL
HSPTSPRAQLHNSFWLLKLLFLLGLCAIAFCIPDEHLFPAWHYIGICGGFAFILLQLVLITAFAHSWNKN
WQTGAAQDCSWFLAVLLATLGFYSMAGVGAVLLFHYYTHPAGCLLNKMLLSLHLCFCGLISFLSIAPCIR
LKQPRSGLLQASVISCYIMYLTFSALSSRPPERVILQGQNHTLCLPGLSKMEPQTPDISLAMLSASIMYA
CVLFACNEASYLAEVFGPLWIVKVYSYEFQKPSLCFCCPETVEADKGQRGGAARPADQETPPAPPVQVQH
LSYNYSAFHFVFFLASLYVMVTLTNWFSYEGAELEKTFIKGSWATFWVKVASCWACVLLYLGLLLAPLCW
PPTQKPQPLILRRRRHRIISPDNKYPPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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