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Report for CCDS58139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58139.1 Public Homo sapiens 11 SYT7 24 110 108 CCDS HistoryNCBI Gene:9066Re-query CCDS DB by CCDS ID:58139.1Re-query CCDS DB by GeneID:9066See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58139.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540677.5 ENSP00000444201.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540677.5Link to Ensembl Protein Viewer:ENSP00000444201.1Re-query CCDS DB by Nucleotide ID:ENST00000540677Re-query CCDS DB by Protein ID:ENSP00000444201
Original member Current member NCBI NM_001252065.2 NP_001238994.1 Accepted alive Link to Nucleotide Sequence:NM_001252065.2Link to Protein Sequence:NP_001238994.1Re-query CCDS DB by Nucleotide ID:NM_001252065Re-query CCDS DB by Protein ID:NP_001238994Link to BLAST:NP_001238994.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001238994.1 478 O43581-2 478 100% 0 0

Chromosomal Locations for CCDS 58139.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61518627 61518731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61523075 61523274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61523827 61523941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61524363 61524532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61527915 61528185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61532989 61533124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61546031 61546255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61551384 61551463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61556104 61556207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61580790 61580820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGTACCGGGACCCGGAGGCGGCCAGCCCAGGGGCGCCCTCGCGCGACGTCCTGCTGGTCTCTGCCATCA
TCACCGTCAGCCTTAGCGTCACTGTCGTCCTCTGCGGCCTCTGCCACTGGTGTCAGCGCAAACTGGGCAA
ACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCAGGGCGTGGGCGCAGTGAGAAGAAGGCT
ATCAATGGCACCCTCCTGTCGGGCGCCAAAGTGGCCGCCGCGGCGGGGCTGGCGGTGGAGCGGGAAGGCC
GGCTGGGGGAGAAGCCGGCACCGGTGCCGCCACCCGGAGAGGACGCCTTGAGAAGCGGCGGGGCTGCCCC
CAGCGAGCCGGGCAGCGGTGGCAAGGCGGGGAGAGGCCGCTGGCGGACGGTGCAGAGCCACCTGGCCGCA
GGGAAGCTCAACTTGTCCAAGTTGCCTGCAGGAGGGAAGGCGGTGAACACAGCCCCCGTGCCAGGCCAGA
CACCCCACGATGAGTCCGACCGCCGGACCGAGCCACGTTCCTCCGTCTCAGACCTCGTCAACTCCCTCAC
CAGCGAGATGCTCATGCTCTCCCCAGGCTCCGAGGAGGATGAGGCCCACGAGGGTTGCAGCCGAGAGAAC
CTGGGCCGGATCCAGTTCAGTGTCGGCTACAACTTCCAGGAGTCCACGCTCACCGTGAAGATCATGAAGG
CCCAGGAGCTGCCGGCCAAGGACTTCAGCGGCACCAGCGACCCCTTCGTCAAGATCTACCTGCTGCCCGA
CAAGAAGCACAAGCTGGAGACCAAGGTGAAGCGGAAGAACCTGAACCCCCACTGGAACGAGACCTTCCTC
TTTGAAGGTTTTCCCTATGAGAAGGTGGTGCAGAGGATCCTCTACCTCCAAGTCCTGGACTATGACCGCT
TCAGCCGCAACGACCCCATTGGGGAGGTGTCCATCCCCCTTAACAAGGTGGACCTGACCCAGATGCAGAC
CTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGTGGGAGCCGAGGGGAGCTGCTCTTGTCTCTCTGC
TACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCCCGGAACCTCAAAGCCATGGACATCG
GGGGCACATCAGACCCCTACGTGAAGGTATGGCTGATGTACAAGGACAAGCGGGTGGAGAAGAAGAAGAC
GGTGACGATGAAGAGGAACCTGAACCCCATCTTCAATGAGTCCTTCGCCTTCGATATCCCCACGGAGAAG
CTGAGGGAGACGACCATCATCATCACTGTCATGGACAAGGACAAGCTCAGCCGCAATGACGTCATCGGCA
AGATCTACCTGTCCTGGAAGAGCGGGCCAGGGGAGGTGAAGCACTGGAAGGACATGATTGCCCGTCCCCG
GCAGCCCGTGGCCCAGTGGCACCAGCTGAAGGCCTGA

Translation (478 aa):
MYRDPEAASPGAPSRDVLLVSAIITVSLSVTVVLCGLCHWCQRKLGKRYKNSLETVGTPDSGRGRSEKKA
INGTLLSGAKVAAAAGLAVEREGRLGEKPAPVPPPGEDALRSGGAAPSEPGSGGKAGRGRWRTVQSHLAA
GKLNLSKLPAGGKAVNTAPVPGQTPHDESDRRTEPRSSVSDLVNSLTSEMLMLSPGSEEDEAHEGCSREN
LGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFL
FEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPCSDGSGSRGELLLSLC
YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTEK
LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLKA


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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