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Report for CCDS58082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58082.1 Public Homo sapiens 10 ARID5B 24 110 108 CCDS HistoryNCBI Gene:84159Re-query CCDS DB by CCDS ID:58082.1Re-query CCDS DB by GeneID:84159See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58082.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309334.5 ENSP00000308862.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000309334.5Link to Ensembl Protein Viewer:ENSP00000308862.5Re-query CCDS DB by Nucleotide ID:ENST00000309334Re-query CCDS DB by Protein ID:ENSP00000308862
Original member Current member NCBI NM_001244638.2 NP_001231567.1 Accepted alive Link to Nucleotide Sequence:NM_001244638.2Link to Protein Sequence:NP_001231567.1Re-query CCDS DB by Nucleotide ID:NM_001244638Re-query CCDS DB by Protein ID:NP_001231567Link to BLAST:NP_001231567.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001231567.1 945 Q14865-2 945 100% 0 0

Chromosomal Locations for CCDS 58082.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 62049480 62049483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62050888 62051000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62057117 62057318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62059243 62059295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62069700 62069797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62085702 62085900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62090862 62093030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2838 nt):
ATGGCGCCAAATCTTAAAGGCAGACCACGCAAAAAGAAACCATGCCCACAAAGAAGAGATTCATTCAGTG
GTGTTAAGGATTCCAACAACAATTCCGATGGCAAAGCCGTTGCCAAGGTGAAATGTGAGGCCAGGTCAGC
CTTGACCAAGCCGAAGAATAACCATAACTGTAAAAAAGTCTCAAATGAAGAAAAACCAAAGGTTGCCATT
GGTGAAGAGTGCAGGGCAGATGAACAAGCCTTCTTGGTGGCACTTTATAAATACATGAAAGAAAGGAAAA
CGCCGATAGAACGAATACCCTATTTAGGTTTTAAACAGATTAACCTTTGGACTATGTTTCAAGCTGCTCA
AAAACTGGGAGGATATGAAACAATAACAGCCCGCCGTCAGTGGAAACATATTTATGATGAATTAGGCGGT
AATCCTGGGAGCACCAGCGCTGCCACTTGTACCCGCAGACATTATGAAAGATTAATCCTACCATATGAAA
GATTTATTAAAGGAGAAGAAGATAAGCCCCTGCCTCCAATCAAACCTCGGAAACAGGAGAACAGTTCACA
GGAAAATGAGAACAAAACAAAAGTATCTGGAACCAAACGCATCAAACATGAAATACCTAAAAGCAAGAAA
GAAAAAGAAAATGCCCCAAAGCCCCAGGATGCAGCAGAGGTTTCATCAGAGCAAGAAAAAGAACAAGAGA
CTTTAATAAGCCAGAAAAGCATCCCTGAGCCTCTCCCAGCAGCAGACATGAAGAAAAAAATAGAAGGGTA
TCAGGAATTTTCAGCGAAGCCCCTGGCATCCAGAGTAGACCCAGAGAAGGACAACGAAACAGACCAAGGT
TCCAACAGTGAGAAGGTGGCAGAGGAGGCGGGAGAGAAGGGGCCCACACCTCCACTCCCAAGTGCTCCTC
TGGCCCCAGAAAAAGATTCAGCCTTGGTCCCTGGGGCCAGCAAACAGCCACTCACCTCTCCTAGTGCCCT
GGTGGACTCAAAACAAGAATCCAAACTGTGCTGTTTTACAGAGAGCCCTGAAAGTGAACCCCAAGAAGCA
TCCTTCCCCAGCTTCCCCACCACACAGCCACCGCTGGCAAACCAGAATGAGACGGAGGATGACAAACTGC
CCGCCATGGCAGATTACATTGCCAACTGCACCGTGAAGGTGGACCAGCTGGGCAGTGACGACATCCACAA
TGCGCTCAAGCAGACCCCAAAGGTCCTTGTGGTCCAGTCGTTTGACATGTTCAAAGACAAAGACCTGACT
GGGCCCATGAACGAGAACCATGGACTTAATTACACGCCCCTGCTCTACTCTAGGGGCAACCCAGGCATCA
TGTCCCCACTGGCCAAGAAAAAGCTTTTGTCCCAAGTGAGTGGGGCCAGCCTCTCCAGCAGCTACCCTTA
TGGCTCCCCACCCCCTTTGATCAGCAAAAAGAAACTGATTGCTAGGGATGACTTGTGTTCCAGTTTGTCC
CAGACCCACCATGGCCAAAGCACTGACCATATGGCGGTCAGCCGGCCATCAGTGATTCAGCACGTCCAGA
GTTTCAGAAGCAAGCCCTCGGAAGAGAGAAAGACCATCAATGACATCTTTAAGCATGAGAAACTGAGTCG
ATCAGATCCCCACCGCTGCAGCTTCTCCAAGCATCACCTTAACCCCCTTGCTGACTCCTACGTCCTGAAG
CAAGAAATTCAGGAGGGCAAGGATAAACTCTTAGAGAAAAGGGCCCTCCCCCATTCCCACATGCCTAGCT
TCCTGGCTGACTTCTACTCGTCCCCTCATCTCCATAGCCTCTACAGACACACCGAGCACCATCTTCATAA
TGAACAGACATCCAAATACCCTTCCAGGGACATGTACAGGGAATCGGAAAACAGTTCTTTTCCTTCCCAC
AGACACCAAGAAAAGCTCCATGTAAATTATCTCACGTCCCTGCACCTGCAAGACAAAAAGTCGGCGGCAG
CAGAAGCCCCTACGGATGATCAGCCTACAGATCTGAGCCTTCCCAAGAACCCGCACAAACCTACCGGCAA
GGTCCTGGGCCTGGCTCATTCCACCACAGGGCCCCAGGAGAGCAAAGGCATCTCCCAGTTCCAGGTCTTA
GGCAGCCAGAGTCGAGACTGTCACCCCAAAGCCTGTCGGGTATCACCCATGACCATGTCAGGCCCTAAAA
AATACCCTGAATCGCTTTCAAGATCAGGAAAACCTCACCATGTGAGACTGGAGAATTTCAGGAAGATGGA
AGGCATGGTCCACCCAATCCTGCACCGGAAAATGAGCCCGCAGAACATTGGGGCGGCGCGGCCGATCAAG
CGCAGCCTGGAGGATTTGGACCTTGTGATTGCAGGGAAAAAGGCCCGGGCAGTGTCTCCCTTAGACCCAT
CCAAGGAGGTCTCTGGGAAGGAGAAGGCCTCTGAGCAGGAGAGTGAAGGCAGCAAAGCAGCGCACGGTGG
GCATTCCGGGGGCGGATCAGAAGGCCACAAGCTTCCCCTCTCCTCCCCTATCTTCCCAGGTCTGTATTCC
GGGAGCCTGTGTAACTCGGGCCTCAACTCCAGGCTCCCGGCTGGGTATTCTCATTCTCTGCAGTACTTGA
AAAACCAGACTGTGCTTTCTCCACTCATGCAGCCCCTGGCTTTCCACTCGCTTGTGATGCAAAGAGGAAT
TTTTACATCACCGACAAATTCTCAGCAGCTGTACAGACACTTGGCTGCGGCTACACCTGTAGGAAGTTCA
TATGGGGACCTTTTGCATAACAGCATTTACCCTTTAGCTGCTATAAATCCTCAAGCTGCCTTTCCATCTT
CCCAGCTGTCATCCGTGCACCCCAGTACAAAACTGTAG

Translation (945 aa):
MAPNLKGRPRKKKPCPQRRDSFSGVKDSNNNSDGKAVAKVKCEARSALTKPKNNHNCKKVSNEEKPKVAI
GEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGG
NPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPPIKPRKQENSSQENENKTKVSGTKRIKHEIPKSKK
EKENAPKPQDAAEVSSEQEKEQETLISQKSIPEPLPAADMKKKIEGYQEFSAKPLASRVDPEKDNETDQG
SNSEKVAEEAGEKGPTPPLPSAPLAPEKDSALVPGASKQPLTSPSALVDSKQESKLCCFTESPESEPQEA
SFPSFPTTQPPLANQNETEDDKLPAMADYIANCTVKVDQLGSDDIHNALKQTPKVLVVQSFDMFKDKDLT
GPMNENHGLNYTPLLYSRGNPGIMSPLAKKKLLSQVSGASLSSSYPYGSPPPLISKKKLIARDDLCSSLS
QTHHGQSTDHMAVSRPSVIQHVQSFRSKPSEERKTINDIFKHEKLSRSDPHRCSFSKHHLNPLADSYVLK
QEIQEGKDKLLEKRALPHSHMPSFLADFYSSPHLHSLYRHTEHHLHNEQTSKYPSRDMYRESENSSFPSH
RHQEKLHVNYLTSLHLQDKKSAAAEAPTDDQPTDLSLPKNPHKPTGKVLGLAHSTTGPQESKGISQFQVL
GSQSRDCHPKACRVSPMTMSGPKKYPESLSRSGKPHHVRLENFRKMEGMVHPILHRKMSPQNIGAARPIK
RSLEDLDLVIAGKKARAVSPLDPSKEVSGKEKASEQESEGSKAAHGGHSGGGSEGHKLPLSSPIFPGLYS
GSLCNSGLNSRLPAGYSHSLQYLKNQTVLSPLMQPLAFHSLVMQRGIFTSPTNSQQLYRHLAAATPVGSS
YGDLLHNSIYPLAAINPQAAFPSSQLSSVHPSTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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