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Report for CCDS57690.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57690.1 Public Mus musculus 9 Tfdp2 23 108 98 CCDS HistoryNCBI Gene:211586Re-query CCDS DB by CCDS ID:57690.1Re-query CCDS DB by GeneID:211586See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57690.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165768.3 ENSMUSP00000128260.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165768.3Link to Ensembl Protein Viewer:ENSMUSP00000128260.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000165768Re-query CCDS DB by Protein ID:ENSMUSP00000128260
Original member NCBI NM_001184711.1 NP_001171640.1 Updated not alive Link to Nucleotide Sequence:NM_001184711.1Link to Protein Sequence:NP_001171640.1Re-query CCDS DB by Nucleotide ID:NM_001184711Re-query CCDS DB by Protein ID:NP_001171640
Current member NCBI NM_001184711.2 NP_001171640.1 Accepted alive Link to Nucleotide Sequence:NM_001184711.2Link to Protein Sequence:NP_001171640.1Re-query CCDS DB by Nucleotide ID:NM_001184711Re-query CCDS DB by Protein ID:NP_001171640Link to BLAST:NP_001171640.1

Chromosomal Locations for CCDS 57690.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 96273940 96273942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96287601 96287722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96290580 96290627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96294965 96295127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96297624 96297770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96300372 96300440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96306800 96306951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96310522 96310688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96317477 96317582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96317788 96317971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGATTATAAGCACACCGCAGAGAATTGCCAATTCAGGAAGTGTTCTGATTGGGAATCCATATACCCCTG
CACCCGCAATGGTCACTCAGACTCACATAGCTGAGGCTGCTGGCTGGGTTCCCAGTGATAGAAAACGAGC
TAGAGAATTTATAGACTCTGATTTTTCAGAAAGTAAACGAAGCAAAAAAGGAGATAAAAATGGGAAAGGC
TTGAGACATTTTTCAATGAAGGTGTGTGAGAAAGTTCAGCGGAAAGGCACAACGTCATACAATGAGGTAG
CTGATGAGCTGGTATCTGAGTTTACCAACTCAAATAACCATCTGGCAGCTGATTCGCAGGCTTATGATCA
GAAGAACATTAGACGAAGAGTTTATGATGCTTTAAATGTACTAATGGCGATGAACATAATTTCAAAGGAA
AAAAAAGAAATCAAGTGGATTGGCCTGCCTACCAATTCTGCTCAGGAATGCCAGAACCTGGAAATCGAGA
AGCAGAGGCGGATAGAACGGATAAAGCAGAAGCGAGCCCAGCTACAAGAACTTCTCCTTCAGCAAATTGC
TTTTAAAAACCTGGTACAGAGAAATCGACAAAATGAACAACAAAACCAGGGCCCTCCAGCTGTGAATTCC
ACCATTCAGCTGCCATTTATAATCATTAATACAAGCAGGAAAACAGTCATAGACTGCAGCATCTCCAGTG
ACAAATTTGAATACCTTTTTAATTTTGATAACACCTTTGAGATCCACGACGACATAGAGGTACTGAAGCG
GATGGGAATGTCCTTTGGTCTGGAGTCAGGCAAATGCTCTCTGGAGGATCTGAAAATCGCAAAATCCCTG
GTTCCAAAAGCTTTAGAAGGCTATATTACAGATATCTCCACAGGACCTTCTTGGTTAAATCAGGGACTAC
TTTTGAACTCTACCCAATCAGTTTCAAATTTAGACCCGACCACCGGTGCCACTGTACCCCAATCAAGTGT
AAACCAAGGGTTGTGCTTGGATGCTGAAGTGGCCTTAGCAACTGGGCAGCTCCCTGCCTCAAACAGTCAC
CAGTCCAGCAGTGCAGCCTCTCACTTCTCGGAGTCCCGCGGCGAGACCCCCTGTTCATTCAACGATGAAG
ATGAGGAAGATGAAGAGGAGGATCCCTCCTCCCCAGAATAA

Translation (386 aa):
MIISTPQRIANSGSVLIGNPYTPAPAMVTQTHIAEAAGWVPSDRKRAREFIDSDFSESKRSKKGDKNGKG
LRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSQAYDQKNIRRRVYDALNVLMAMNIISKE
KKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPAVNS
TIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKIAKSL
VPKALEGYITDISTGPSWLNQGLLLNSTQSVSNLDPTTGATVPQSSVNQGLCLDAEVALATGQLPASNSH
QSSSAASHFSESRGETPCSFNDEDEEDEEEDPSSPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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