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Report for CCDS57665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57665.1 Public Mus musculus 9 Ncapd3 23 108 98 CCDS HistoryNCBI Gene:78658Re-query CCDS DB by CCDS ID:57665.1Re-query CCDS DB by GeneID:78658See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57665.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073127.13 ENSMUSP00000072871.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073127.13Link to Ensembl Protein Viewer:ENSMUSP00000072871.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000073127Re-query CCDS DB by Protein ID:ENSMUSP00000072871
Original member Current member EBI ENSMUST00000216677.1 ENSMUSP00000150938.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216677.1Link to Ensembl Protein Viewer:ENSMUSP00000150938.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216677Re-query CCDS DB by Protein ID:ENSMUSP00000150938
Original member NCBI NM_178113.3 NP_835214.2 Updated not alive Link to Nucleotide Sequence:NM_178113.3Link to Protein Sequence:NP_835214.2Re-query CCDS DB by Nucleotide ID:NM_178113Re-query CCDS DB by Protein ID:NP_835214
Current member NCBI NM_178113.4 NP_835214.2 Accepted alive Link to Nucleotide Sequence:NM_178113.4Link to Protein Sequence:NP_835214.2Re-query CCDS DB by Nucleotide ID:NM_178113Re-query CCDS DB by Protein ID:NP_835214Link to BLAST:NP_835214.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835214.2 1506 Q6ZQK0 1506 99.9336% 0 1

Chromosomal Locations for CCDS 57665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 27030770 27030830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27036985 27037139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27041393 27041555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27044496 27044680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27045051 27045221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27045528 27045589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27045905 27045992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27048155 27048288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27050297 27050369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27051362 27051487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27051619 27051871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27052324 27052380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27052594 27052665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27055472 27055545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27056044 27056178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27057861 27058081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27063264 27063455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27063770 27063867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27063977 27064092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27066943 27067050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27069668 27069782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27069875 27069982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27071725 27071963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27072723 27072802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27082406 27082543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27082830 27082963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27083184 27083380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27085940 27086050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27087382 27087564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27087979 27088196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27088433 27088566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27089300 27089377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27094401 27094472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27094561 27094621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27094697 27094805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4521 nt):
ATGGCGCTGCAGGATCTTGGAGAAAACTTGCAGCCTTGGTGTCCGCTGGGTCTCAGCCTCGAATGGGTGA
AGACCGTGTGGGACCTGGACTTCACGGAGATTGAGCCTTTGGACCCCAGCATAGTAGGCGAGATCCTAGA
GACTGGAAGAGATGCGTTCACAAAGCTCTATGGAAGCCTCTTCCCCTTTGCGACTGACGAAAGTGGATCT
TTAGAGAGCATCTGGACCTTCTTCACTGAGAATGACATTTCCAGTAACACACTGGTGGCATTGTTCTGTC
ACTTCGTCCAGGAAGCCCATAAAAAAAGTGCCAGTGCACAATATCGAGAGTATGGCCTTCATGCTGCTGG
GCTCTATTTCTTGCTGTTAGAAATACCAGGCAGCGTGGTCAATCAAGTGTTCCACCCAGTGATGTTTGAC
AAGTGTATTCAGATTCTGAAGAGGAGCTGGCCACAAGAATCTAACTTGACTCAGAAAAGAAAAAAGGACC
ACTCCAAGAGTTCTAAGGATAATTATAGGAAGAGCAGAAAAAGAGGAAAACCACCTAGAAAAGAGGATTA
TCAGGTGGATGAACTTTCAAGAGAGGAAGAGGAAGAGGAAGAGGAGATTTATTTTTCTGGCCGGGACCTT
TGTCAAATACGAGATGCCATATTTAATCTTCTAAAGAATTTTTTAAGGCTTCTGCCCAAGTTTTCTCTTA
AAGAAAAACCACAGTCTATTCAAACTTGTATAGAGGTATTTGTTGCATTAACTAGTTTTGAGCCAATTCC
TCATAAATTTCTTATTTCACAAGCCAGGAACCTCAATGAAGTCAAACACATATCAGAGCTGGCCTACTAT
GGACTGTATTTGCTGTGCTCCCCAGTACATGGAGAGGAAAATAAGGTTATTGGTTCTATTTTCCATCAAA
TGCTAAATGTGATATTGATGTTAGAAGTAGGGGAAGGGTCCCGCTGTGCCCCCCTAGCCATAACCTCACA
AGTCATCAATTGTAGAAACCAGGCAGTCCAGTTTGTCAGCTCACTTGTGGATGAACTACAAGCAAGTGTG
TACCCAGTCCTTGGTACTCTACTGCAGCATATCTGTGCCAAGGTGGTAGACAAAGCAGAGTATCGGACCT
ACGCAGCACAGTCCCTGGTCCAGCTGCTGACTAAGCTTCCCTCTGAGGAGTATGCCACATTCATTGCCTG
GCTTTACAAATATTCACGAAGTTCCAAGATTCCACACCGGGTCTTCACTCTTGATGTGGCTTTAGCTCTC
TTAACGCTGCCTGAAAGAGAGCTGGATGACACTGTATCTTTGGAGCATCAGAAGTTTCTAAAGCATAAAT
TCTTTGTGCAAGAAATTATATTTGATCGCTGCTTAGACAAGGCACCTACTGTCCGCAGCAAGGCACTGTC
CAGCTTTGCACATTGTCTGGAGTTGTCTTCTAGCAACACATCTGAGAGTATATTGGAAATCTTCATTAAC
AGTAATCTAGTTCCAGGGATACAGAATCTCTCTAACACCGTACTGAATCCCTCACCAGTGCTAACCAGTC
GAAATGGCTACTCCGCGCAAAGCCGTACCCATAACAATGATGAACAGACTCTGCCTGGAGAAAGATGCTT
CATGACAATGCTGAGAAAAAGAATCAAGGATGAGAAAATCAATGTCAGGAAGTCTGCACTCCAGGTGTTA
ATGAGCATTTTGAAACACTGTGACATCTTGAGCATGGAGCAGGACCTGTTGATCCTGCAGGACCATTGTC
GAGACCCTGCCATATCTGTGCGGAAGCAAGCCCTACAGTCTCTTACAGAACTTGTTATGGCCCAACCTAC
ATGTGTCCCAGTCCAGAAAGCCTGGTTGATGGGTGTCATCCCAGTGGTGATGGACTGTGAGAGCACAGTG
CAAGAGAAGGCCTTGGAGTGCCTGGACCAGCTCCTGCTGCAGAACATTAAGCATCACAAGAAATTTCACA
GTGCAGACAGAAGCCAGGTGCTTGCGTGGTCCCTACTTGCTCTCCTCACCATAGAGAACCAGGATCTGAG
ACGCTATTTAAATAAGGCTTTTCATATCTGGTCCAAGAAAGATAAATTCTCATCCACTTTTATAAACAGT
GTGATATCCCACACTGACACAGAACGTTCTGCACCAGCCTGGATGCTGCTGTCCAAGATCACTTGCTCAT
CACCCAAGCTGGACTACACCAAAATAATAGAGTCGTGGGAGAGACTCAGCAGAGAACAGTCTCCCAACTC
AAACACCTTAGGCTATATGCTGTGTGTCATTGGGCATATTGCAAAGCATCTTCCCAAGGGGACCCGGGAC
AAGATAACTGGTGTGATCAAGGCCAAGCTGAATGGATTTCAGTGGTCTCCAGAGCTGATCAGTTCGTCTG
TTGACGCATTGCAAAAGCTTTGCAGGGCATCTGCCAAGACAGTGCTGGAAGAGCAGGGACTGCTGAAGCA
GGTGTGTGGGGATGTGCTCGCCACCTGTGAGCAACACCTCTCTAACATCCTTCTGAAGGAAGATGGGACA
GGGAACATGGATGAAGGCCTGGTGGTGAAATGTATCTTTACCCTAGGAGACATAGCCCAGTTATGTCCAG
CCATAGTAGAGAAGCGAGTCTTCCTTCTAATCCAGTCGATTCTGGCCTCTTCTGCTCATTCGGATCACTT
ACCATCATCTCAAGGGACCACAGACGCCCTCGACAGTCAGCCTCCTTTCCAGCCCAGAAGCTCCGCCATG
CCTTCTGTGATTAGAGCACATGCCATCATCACTTTAGGTAAACTCTGTTTACAGCATGAAGACCTTGCAA
AGAAAAGCATCCCAGCCCTTGTGCGAGAACTTGAAGTGAGTGAGGATGTGGCTGTCCGCAACAATGTCAT
CATTGTGATATGTGATCTTTGTATCCGGTACACTGTCATGGTGGACAATTATATTCCCAACATTTCTGTC
TGCCTGAAGGATTCAGACCCGTTCATCCGAAAGCAGACACTGGTCTTGCTTACCAACCTCTTACAGGAGG
AATATGTGAAGTGGAAGGGCTCTCTGTTCTTCCGATTTGTCAGCACTTTGGTGGACTCACACCCAGACAT
TGCCAGCCTTGGGGAGTTCTGCCTGGCTCACTTGTTGCTGAAGAGGAACCCTACCATGTTTTTCCAGCAC
TTCATTGAGTGCATATTCCACTTCAACAGCTATGAGAAGCATGGGCAGTATAACAAGTTTTCCCAGTCAG
AGAGGGGGAAGCAGCTGTTTTTACTAAAGGGAAAGACAAACAAGGAGAAGCGAATGAGAATCTACAAGTT
TCTTCTTGAGCACTTCACAGACGAGCAGCGGTTCAATGTCACTTCCAAGATCTGTCTTAACATTTTGGCA
TGCTTCACGGATGGCATCCTGCCCATGGACATGGAAGCCAGCGAGTTGCTCTCAGATACCTTTGACATCC
TCAACTCCAAGGAGATCAAACTATTGGCAATGAGAGCACAGACATCCAAGGACCTCCTGGAAGAAGATGA
CGTGGCTCTGGCAAATGTGGTCATGCAGGAAGCACAGATGAAGATCATCTCACAGGTTCAAAAGAGGAAT
TTCATAGAGAATATTATTCCAATCATCATCTCCCTGAAGACTGTGCTGGAGAAAAATAAGATCCCTGCTT
TGCGGGAACTCATGAACTACCTGAGGGAAGTTATGCAAGATTACCGGGATGAAATCAACGATTTCTTTGC
AGTTGACAAACAGCTGGCATCTGAACTTGAGTATGACATGAAGAAGTATAATGAGCAGCTAGCCCAGGAG
CAAGCTCTGACAGAACATGCTAATGCAACCAAAGGGCCTGAAGACAGTGACAGGGTACCCTCTGCTCAGG
TTGCTCCAGACTTAGAAGCTGTACCTGCTCTTGCTGCTGCTCCTATGGCTGCTGCTGCTGCTGCTGCTCC
TATGGCTGCTGCTGCTGCTGCTGCTGGCCAGGACAATGCTGATGTGCCTCCAACCCAGAGCCGGCCTTCA
GCACCTAGGTCCAACTTCACACCAACTTTGCCTCCCATATCCGAAAATGGACCTCTGAAGATAATGTCCA
GTACCAGGCCCATGTCTCTCAGTACCATCGCCATCCTGAATTCAGTCAAGAAAGCTGTTGCGTCTAAGAA
TAGGACACGCAGTTTAGGAGCCTTGCCTTTCAATGTGGAGACCGGAAGCCCAGAAAATCCCTCCAGCCAT
GAATCTTCCTTAAGCTTGGAGAAAGAGTCTGACAGAACTGTCAACCATGTAACTAAACGGGCAATCAGCA
CCCCAGAGAATTCCATCAGTGACGTCACATTTGCAGCAGGGGTCAGTTACATAGGGACACCAGCAACTTT
TTTTACCAAAGAGAAACACGAAGCCCAAGAACAAGGAAGTGACATTTTATGTTTATCGCTGCTTGATAAA
AGACCTCCACAGTCTCCACAGTGGAACGTAAAGTCCCCAGCCAGGAGTCACGGCAGCACAAGATCCAGCC
GGAGGTCCCTTCGTAAGGCCCCCCTGAAGACAGCCAACTGA

Translation (1506 aa):
MALQDLGENLQPWCPLGLSLEWVKTVWDLDFTEIEPLDPSIVGEILETGRDAFTKLYGSLFPFATDESGS
LESIWTFFTENDISSNTLVALFCHFVQEAHKKSASAQYREYGLHAAGLYFLLLEIPGSVVNQVFHPVMFD
KCIQILKRSWPQESNLTQKRKKDHSKSSKDNYRKSRKRGKPPRKEDYQVDELSREEEEEEEEIYFSGRDL
CQIRDAIFNLLKNFLRLLPKFSLKEKPQSIQTCIEVFVALTSFEPIPHKFLISQARNLNEVKHISELAYY
GLYLLCSPVHGEENKVIGSIFHQMLNVILMLEVGEGSRCAPLAITSQVINCRNQAVQFVSSLVDELQASV
YPVLGTLLQHICAKVVDKAEYRTYAAQSLVQLLTKLPSEEYATFIAWLYKYSRSSKIPHRVFTLDVALAL
LTLPERELDDTVSLEHQKFLKHKFFVQEIIFDRCLDKAPTVRSKALSSFAHCLELSSSNTSESILEIFIN
SNLVPGIQNLSNTVLNPSPVLTSRNGYSAQSRTHNNDEQTLPGERCFMTMLRKRIKDEKINVRKSALQVL
MSILKHCDILSMEQDLLILQDHCRDPAISVRKQALQSLTELVMAQPTCVPVQKAWLMGVIPVVMDCESTV
QEKALECLDQLLLQNIKHHKKFHSADRSQVLAWSLLALLTIENQDLRRYLNKAFHIWSKKDKFSSTFINS
VISHTDTERSAPAWMLLSKITCSSPKLDYTKIIESWERLSREQSPNSNTLGYMLCVIGHIAKHLPKGTRD
KITGVIKAKLNGFQWSPELISSSVDALQKLCRASAKTVLEEQGLLKQVCGDVLATCEQHLSNILLKEDGT
GNMDEGLVVKCIFTLGDIAQLCPAIVEKRVFLLIQSILASSAHSDHLPSSQGTTDALDSQPPFQPRSSAM
PSVIRAHAIITLGKLCLQHEDLAKKSIPALVRELEVSEDVAVRNNVIIVICDLCIRYTVMVDNYIPNISV
CLKDSDPFIRKQTLVLLTNLLQEEYVKWKGSLFFRFVSTLVDSHPDIASLGEFCLAHLLLKRNPTMFFQH
FIECIFHFNSYEKHGQYNKFSQSERGKQLFLLKGKTNKEKRMRIYKFLLEHFTDEQRFNVTSKICLNILA
CFTDGILPMDMEASELLSDTFDILNSKEIKLLAMRAQTSKDLLEEDDVALANVVMQEAQMKIISQVQKRN
FIENIIPIIISLKTVLEKNKIPALRELMNYLREVMQDYRDEINDFFAVDKQLASELEYDMKKYNEQLAQE
QALTEHANATKGPEDSDRVPSAQVAPDLEAVPALAAAPMAAAAAAAPMAAAAAAAGQDNADVPPTQSRPS
APRSNFTPTLPPISENGPLKIMSSTRPMSLSTIAILNSVKKAVASKNRTRSLGALPFNVETGSPENPSSH
ESSLSLEKESDRTVNHVTKRAISTPENSISDVTFAAGVSYIGTPATFFTKEKHEAQEQGSDILCLSLLDK
RPPQSPQWNVKSPARSHGSTRSSRRSLRKAPLKTAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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