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Report for CCDS57643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57643.1 Public Mus musculus 8 Chtf8 23 108 98 CCDS HistoryNCBI Gene:214987Re-query CCDS DB by CCDS ID:57643.1Re-query CCDS DB by GeneID:214987See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57643.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177068.7 ENSMUSP00000135029.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177068.7Link to Ensembl Protein Viewer:ENSMUSP00000135029.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177068Re-query CCDS DB by Protein ID:ENSMUSP00000135029
Original member Current member EBI ENSMUST00000175940.1 ENSMUSP00000135077.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175940.1Link to Ensembl Protein Viewer:ENSMUSP00000135077.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175940Re-query CCDS DB by Protein ID:ENSMUSP00000135077
Original member Current member NCBI NM_001364186.2 NP_001351115.1 Accepted alive Link to Nucleotide Sequence:NM_001364186.2Link to Protein Sequence:NP_001351115.1Re-query CCDS DB by Nucleotide ID:NM_001364186Re-query CCDS DB by Protein ID:NP_001351115Link to BLAST:NP_001351115.1
Original member Current member NCBI NM_145412.4 NP_663387.3 Accepted alive Link to Nucleotide Sequence:NM_145412.4Link to Protein Sequence:NP_663387.3Re-query CCDS DB by Nucleotide ID:NM_145412Re-query CCDS DB by Protein ID:NP_663387Link to BLAST:NP_663387.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351115.1 121 P0CG15 121 100% 0 0
NP_663387.3 121 P0CG15 121 100% 0 0

Chromosomal Locations for CCDS 57643.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 106886302 106886526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106886920 106887037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106887301 106887323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (366 nt):
ATGGTGCAAATTGTTATTTCCAGTACGGGGGCTGAAGGCCTGGCAGAATGGGTGCTGATGGAGCTACAGG
GGGAGATCGAGGCTCGCTACAGCACCGGATTAGCTGGAAACCTCCTGGGAGACCTACATTACACCACTGA
GGGAATCCCTGTGCTGATCGTGGGCCATCATATCCTGTATGGGAAAACCATCCACCTGGAGAAACCTTTT
GCAGTCCTTGTCAAACACACTCCTGGGAAGCAGGACTGTGATGAGCCCGGTCGAGGGACTGGCACCCAGT
ACTTGGTGACAGCACTCATCAAAAACAAGATCCTTTTCAAAACTCGCCCCAAGCCTATTATCACCAACGT
CCCCAAGAAAGTATGA

Translation (121 aa):
MVQIVISSTGAEGLAEWVLMELQGEIEARYSTGLAGNLLGDLHYTTEGIPVLIVGHHILYGKTIHLEKPF
AVLVKHTPGKQDCDEPGRGTGTQYLVTALIKNKILFKTRPKPIITNVPKKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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