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Report for CCDS57580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57580.1 Public Mus musculus 7 Zfp143 23 108 98 CCDS HistoryNCBI Gene:20841Re-query CCDS DB by CCDS ID:57580.1Re-query CCDS DB by GeneID:20841See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57580.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000209505.1 ENSMUSP00000147673.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209505.1Link to Ensembl Protein Viewer:ENSMUSP00000147673.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209505Re-query CCDS DB by Protein ID:ENSMUSP00000147673
Original member Current member EBI ENSMUST00000211798.1 ENSMUSP00000148235.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211798.1Link to Ensembl Protein Viewer:ENSMUSP00000148235.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211798Re-query CCDS DB by Protein ID:ENSMUSP00000148235
Original member NCBI NM_009281.3 NP_033307.2 Updated not alive Link to Nucleotide Sequence:NM_009281.3Link to Protein Sequence:NP_033307.2Re-query CCDS DB by Nucleotide ID:NM_009281Re-query CCDS DB by Protein ID:NP_033307
Current member NCBI NM_009281.4 NP_033307.2 Accepted alive Link to Nucleotide Sequence:NM_009281.4Link to Protein Sequence:NP_033307.2Re-query CCDS DB by Nucleotide ID:NM_009281Re-query CCDS DB by Protein ID:NP_033307Link to BLAST:NP_033307.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033307.2 637 O70230-2 637 100% 0 0

Chromosomal Locations for CCDS 57580.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 110069491 110069602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110070478 110070570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110071372 110071455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110072122 110072202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110074068 110074264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110075641 110075715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110077057 110077176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110080268 110080343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110081792 110081917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110083191 110083370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110086113 110086340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110088728 110088876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110091765 110091926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110093070 110093216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110094291 110094374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1914 nt):
ATGTTGTTAGCACAAATAAATCGGGATTCTCAGGGAATGACAGAATTTCCTGGAGGAGGAATGGAGGCTC
AACATGTTACCCTGTGCCTGACGGAGGCAGTAACCGTGGCAGATGGTGACAATTTAGAAAATATGGAAGG
TGTGAGTTTACAAGCTGTGACACTCGCAGACGGCTCTACTGCTTACATACAGCATAATTCTAAAGACGGG
AGACTCATTGATGGCCAGGTCATTCAGCTGGAAGATGGTTCTGCTGCCTATGTTCAGCATGTCCCCATAC
CTAAAAGTAGGGACAGTTTGCGGCTGGAGGATGGGCAAGCAGTGCAGCTAGAAGACGGGACCACTGCATT
TATCCACCACACCTCGAAAGACAGTTATGACCAGAGCTCACTTCAGGCCGTTCAGTTAGAAGATGGGACA
ACAGCTTATATCCACCATGCAGTGCAAGTCCCACAGTCTGATACCATCTTGGCAATTCAGGCTGATGGGA
CAGTGGCAGGGCTGCACACTGGGGATGCCACAATTGACCCAGATACCATTAGTGCTTTGGAGCAGTACGC
AGCAAAGGTATCCATTGATGGCAGTGACGGTGTAACAAGTACAGGAATGATTGGAGAGAATGAGCAAGAG
AAAAAAATGCAGATTGTCTTACAAGGCCATGCTACTCGGGTAACTCCTAAATCTCAGCAGAGTGGAGAAA
AGGCATTTCGGTGCAAATACGACGGCTGTGGGAAACTCTATACAACAGCTCATCACCTTAAGGTCCATGA
GCGCTCACACACAGGAGACCGGCCTTACCAGTGTGAGCATTCAGGCTGTGGGAAAGCATTTGCAACAGGT
TATGGATTAAAAAGTCATTTCAGAACTCATACTGGAGAAAAGCCATATCGGTGTTCAGAAGATAATTGTA
CAAAGTCTTTCAAAACTTCAGGAGATCTACAGAAGCACATCAGAACCCATACAGGAGAAAGGCCCTTTAA
GTGTCCTATTGAAGGCTGTGGTCGGTCCTTTACCACATCAAATATCAGAAAAGTGCACATTAGGACACAC
ACAGGAGAAAGACCTTATTACTGCACAGAACCTGGATGTGGGAGGGCATTTGCCAGCGCAACTAATTATA
AAAACCATGTGAGGATACACACAGGAGAAAAGCCATATGTCTGTACAGTTCCTGGGTGTGACAAACGGTT
TACAGAATATTCCAGTTTGTATAAACACCATGTCGTTCACACTCACTCTAAACCATACAACTGTAACCAC
TGTGGGAAGACGTACAAACAGATTTCCACACTGGCCATGCACAAACGGACAGCCCACAACGACACAGAGC
CCATTGAGGAGGAGCAGGAAGCCTTCTTCGAGCCTCCCCCAGGTCAAGGTGATGATGTTCTTAAAGGGTC
CCAGATCACATATGTTACAGGTGTAGATGGAGAGGACATTGTATCTACACAAGTAGCCACAGTAACCCAG
TCTGGGCTGAGTCAACAAGTCACACTCATATCACAGGATGGGACTCAACATGTCAACATATCTCAAGCTG
ACATGCAGGCCATTGGCAACACCATCACCATGGTAACACAGGATGGCACACCCATCACGGTCCCCACTCA
CGATGCAGTCATCTCCTCAGCAGGAACACATTCTGTTGCTATGGTTACCGCGGAGGGCACAGAAGGACAG
CAGGTCGCAATTGTAGCTCAAGATCTGGCAGCGTTCCATACAGCATCTTCAGAGATGGGACACCAACAAC
ATAGCCATCACCTAGTAACTACAGAAACCAGACCTCTGACCTTAGTGGCAACATCCAACGGCACCCAGAT
CGCAGTTCAGCTTGGAGAGCAGCCGTCTCTGGAAGAAGCTATCAGAATAGCATCGAGGATCCAACAAGGG
GAGACGCCAGGGTTGGATGATTAA

Translation (637 aa):
MLLAQINRDSQGMTEFPGGGMEAQHVTLCLTEAVTVADGDNLENMEGVSLQAVTLADGSTAYIQHNSKDG
RLIDGQVIQLEDGSAAYVQHVPIPKSRDSLRLEDGQAVQLEDGTTAFIHHTSKDSYDQSSLQAVQLEDGT
TAYIHHAVQVPQSDTILAIQADGTVAGLHTGDATIDPDTISALEQYAAKVSIDGSDGVTSTGMIGENEQE
KKMQIVLQGHATRVTPKSQQSGEKAFRCKYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHSGCGKAFATG
YGLKSHFRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPIEGCGRSFTTSNIRKVHIRTH
TGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCNH
CGKTYKQISTLAMHKRTAHNDTEPIEEEQEAFFEPPPGQGDDVLKGSQITYVTGVDGEDIVSTQVATVTQ
SGLSQQVTLISQDGTQHVNISQADMQAIGNTITMVTQDGTPITVPTHDAVISSAGTHSVAMVTAEGTEGQ
QVAIVAQDLAAFHTASSEMGHQQHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQG
ETPGLDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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