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Report for CCDS57572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57572.1 Public Mus musculus 7 Or52n2c 23 108 98 CCDS HistoryNCBI Gene:259061Re-query CCDS DB by CCDS ID:57572.1Re-query CCDS DB by GeneID:259061See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57572.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164391.2 ENSMUSP00000130975.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164391.2Link to Ensembl Protein Viewer:ENSMUSP00000130975.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164391Re-query CCDS DB by Protein ID:ENSMUSP00000130975
Original member Current member EBI ENSMUST00000215359.1 ENSMUSP00000150824.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215359.1Link to Ensembl Protein Viewer:ENSMUSP00000150824.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215359Re-query CCDS DB by Protein ID:ENSMUSP00000150824
Original member Current member NCBI NM_147059.1 NP_667270.1 Accepted alive Link to Nucleotide Sequence:NM_147059.1Link to Protein Sequence:NP_667270.1Re-query CCDS DB by Nucleotide ID:NM_147059Re-query CCDS DB by Protein ID:NP_667270Link to BLAST:NP_667270.1

Chromosomal Locations for CCDS 57572.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104924806 104925762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGTCTGGAGCCAATAGCTCCAGCTTGACCCCAGAATTCTTTATCCTGAATGGTGTTCCTGGGCTGGAAG
ATGCACATGTCTGGATCTCTCTGCCATTCTGCTTCATGTACATGATTGCTGTGGTGGGGAACTGTGGGCT
TATCTACCTCATTGGCCATGAGGAGGCTCTGCACCGGCCCATGTTCTACTTCCTGGCCTTACTCTCCTTC
ACTGATGTTACCTGGTGTACTACCACTGTGCCCAATATGCTGTGTATATTCTGGTTCAATTTCAAGAAGA
TTGGATTTAATTCCTGCCTTGCCCAAATGTTCTTTGTTCATATGTTGACTGGAATGGAGTCTGGTGTGCT
CATGCTCATGGCCCTGGACCGCTATGTAGCCATCTGCAATCCTCTACGATATACTACCATCCTCACCAAC
CCTGTGATTGCCAAGGCTTGTCTTGCAACATTCTTGAGGAGTGTAATGCTCATCTTTCCATTCACTCTCC
TCACCAAGCGCTTGCCCTATTGTAGAAGCATTCTTATCCCCCATACTTACTGTGACCACATGTCTGTGGC
CAAGGTATCCTGTGGCAATGCCAAGGTCAATGCAATCTATGGCCTCATGGTTGCTTTATTGATTGGTGTG
TTTGATATTTGTTGTATCTCTGTGTCTTACACTATGATATTGAGAGCAGTGGTGAGTCTGTCCTCTGCTG
ATGCTCGTCACAAGGCCTTCAGCACCTGTACATCTCACATCTGTGCTATTGTGATCACTTATGTGCCTGC
CTTTTTTACTTTTTTCACTCATCGTTTTGGAGGACACACTATTCCCCACCATGTCCACATCATAGTGGCT
AACCTCTACCTGCTACTGCCCCCTACCATGAACCCAATTGTTTATGGAGTCAAGACCAAGCAGATTCGGG
AAAGTGTAATCAAGTTTTTACTTGGAGACAAAATGGGTTTTACCTAA

Translation (318 aa):
MSGANSSSLTPEFFILNGVPGLEDAHVWISLPFCFMYMIAVVGNCGLIYLIGHEEALHRPMFYFLALLSF
TDVTWCTTTVPNMLCIFWFNFKKIGFNSCLAQMFFVHMLTGMESGVLMLMALDRYVAICNPLRYTTILTN
PVIAKACLATFLRSVMLIFPFTLLTKRLPYCRSILIPHTYCDHMSVAKVSCGNAKVNAIYGLMVALLIGV
FDICCISVSYTMILRAVVSLSSADARHKAFSTCTSHICAIVITYVPAFFTFFTHRFGGHTIPHHVHIIVA
NLYLLLPPTMNPIVYGVKTKQIRESVIKFLLGDKMGFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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