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Report for CCDS57460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57460.1 Public Mus musculus 6 Prh1 23 108 98 CCDS HistoryNCBI Gene:19131Re-query CCDS DB by CCDS ID:57460.1Re-query CCDS DB by GeneID:19131See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 57460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111972.3 ENSMUSP00000107603.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111972.3Link to Ensembl Protein Viewer:ENSMUSP00000107603.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111972Re-query CCDS DB by Protein ID:ENSMUSP00000107603
Original member Current member EBI ENSMUST00000177523.7 ENSMUSP00000135877.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177523.7Link to Ensembl Protein Viewer:ENSMUSP00000135877.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177523Re-query CCDS DB by Protein ID:ENSMUSP00000135877
Original member Current member NCBI NM_011174.4 NP_035304.4 Accepted alive Link to Nucleotide Sequence:NM_011174.4Link to Protein Sequence:NP_035304.4Re-query CCDS DB by Nucleotide ID:NM_011174Re-query CCDS DB by Protein ID:NP_035304Link to BLAST:NP_035304.4

Chromosomal Locations for CCDS 57460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 132569842 132569905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132571596 132572401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGCTGGTGGTCCTGTTTACAGTGGCCCTGCTGGCCCTGAGCTCTGCTCAGGAACCCCGTGAAGAAAATC
AGAATCAAATCCAGATCCCAAATCAAAGGCCACCTCCTTCAGGGTTCCAACCAAGACCGCCTGTTAATGG
GAGCCAGCAAGGCCCACCACCACCAGGAGGCCCACAGCCGAGACCCCCTCAAGGCCCACCACCACCAGGA
GGCCCACAGCCGAGACCCCCTCAAGGCCCACCACCACCAGGAGTACCACAGCCGAGACCCCCTCAAGGCC
CACCACCACCAGGAGGCCCACAGCAGAGACCCCCTCAAGGCCCACCACCACCAGGAGGCCCACAGCATAG
GCCCCCTCAAGGCCCACCACCACCAGGAGGCCCACAGCAGAGACCCCCTCAAGGCCCACCACCACCAGGA
GGCCCACAGCCTAGGCCCCCTCAAGGCCCACCACCACCAGGAGGCCCACAGCAGAGACCCCCTCAAGGCC
CACCACCACCAGGAGGCCCACAGCTGAGACCCCCTCAAGGGCCACCACCACCAGCAGGCCCACAGCCGAG
ACCCCCTCAAGGCCCACCACCACCAGCAGGCCCACAGCCTAGGCCCCCTCAAGGCCCACCCACAACAGGC
CCACAACCAAGACCTACTCAAGGCCCACCCCCAACAGGAGGCCCACAGCAGCGACCCCCTCAAGGCCCAC
CACCACCAGGAGGCCCACAGCCGAGACCCCCTCAAGGCCCACCACCACCCGGAGGCCCACAGCCGAGTCC
CACTCAAGGCCCACCCCCAACAGGAGGCCCACAGCAAACACCTCCTCTGGCTGGAAACACACAAGGCCCA
CCACAAGGCAGACCCCAGGGACCTCGGTAA

Translation (289 aa):
MLVVLFTVALLALSSAQEPREENQNQIQIPNQRPPPSGFQPRPPVNGSQQGPPPPGGPQPRPPQGPPPPG
GPQPRPPQGPPPPGVPQPRPPQGPPPPGGPQQRPPQGPPPPGGPQHRPPQGPPPPGGPQQRPPQGPPPPG
GPQPRPPQGPPPPGGPQQRPPQGPPPPGGPQLRPPQGPPPPAGPQPRPPQGPPPPAGPQPRPPQGPPTTG
PQPRPTQGPPPTGGPQQRPPQGPPPPGGPQPRPPQGPPPPGGPQPSPTQGPPPTGGPQQTPPLAGNTQGP
PQGRPQGPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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