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Report for CCDS57448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57448.1 Public Mus musculus 6 Zfp384 23 108 98 CCDS HistoryNCBI Gene:269800Re-query CCDS DB by CCDS ID:57448.1Re-query CCDS DB by GeneID:269800See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57448.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046064.16 ENSMUSP00000037986.10 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046064.16Link to Ensembl Protein Viewer:ENSMUSP00000037986.10Re-query CCDS DB by Nucleotide ID:ENSMUST00000046064Re-query CCDS DB by Protein ID:ENSMUSP00000037986
Original member Current member EBI ENSMUST00000112428.7 ENSMUSP00000108047.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112428.7Link to Ensembl Protein Viewer:ENSMUSP00000108047.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112428Re-query CCDS DB by Protein ID:ENSMUSP00000108047
Original member Current member NCBI NM_001252083.1 NP_001239012.1 Accepted alive Link to Nucleotide Sequence:NM_001252083.1Link to Protein Sequence:NP_001239012.1Re-query CCDS DB by Nucleotide ID:NM_001252083Re-query CCDS DB by Protein ID:NP_001239012Link to BLAST:NP_001239012.1

Chromosomal Locations for CCDS 57448.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125023684 125023749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125024033 125024270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125024505 125024552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125024746 125025082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125025848 125025940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125030798 125031022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125033240 125033318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125035713 125035871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125036306 125036725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGGAAGAGTCTCACTTCAATTCTAACCCGTACTTCTGGCCTTCTATCCCCACAGTCTCAGGGCAGATTG
AAAACACTATGTTCATCAACAAGATGAAGGATCAGCTGTTGCCAGAGAAGGGCTGTGGACTGGCGCCACC
TCACTATCCCACTTTGCTAACTGTCCCTGCCTCAGTGTCCCTGTCCTCTGGCATCAGCATGGACACAGAG
TCCAAGTCAGAACAGCTGACCCCACACAGTCAGGCATCTGTTACCCAGAATATCACAGTGGTTCCTGTAC
CATCTACAGGACTCATGACTGCGGGAGTCTCCTGTTCTCAGAGGTGGAGAAGAGAAGGGAGTCAATCAAG
GGGTCCTGGTTTGGTAATCACATCCCCGTCAGGCTCTCTTGTGACCACAGCCTCCGCAGCTCAGACTTTC
CCTATTTCGGCTCCCATGATTGTCTCAGCTCTTCCCCCGGGCTCGCAAGCCCTACAGGTGGTCCCTGACC
TCTCCAAGAAGGTAGCGTCAACCCTAACTGAGGAAGGAGGCGGAGGTGGTGGTGGAGGTGGCACTGTGGC
TCCTCCTAAACCTCCTCGGGGCCGCAAGAAGAAGCGGATGCTGGAGTCAGGGCTTCCTGAGATGAATGAC
CCTTACGTCCTTGCCCCTGGGGATGACGATGACCATCAGAAAGATGGCAAGACCTACAGGAGCGAAGGGA
ACTGCGGCACAGGAAATGGACAGAGCCTTGGGCTCATGGATTCAGTTCCCGGCTCCACCACGAACTTGCT
GTGTGACCCTGGGTGCCGGATGTGCTCCCTGACCTTCTACTCCAAGTCGGAGATGCAGATCCACTCCAAG
TCACACACCGAGACCAAGCCCCACAAGTGCCCGCACTGCTCCAAGACCTTCGCCAACAGCTCCTACCTGG
CCCAGCACATCCGGATCCACTCAGGGGCCAAGCCCTATAGTTGTAACTTCTGTGAGAAATCCTTCCGCCA
GCTCTCACATCTGCAGCAGCACACCCGAATCCACACTGGTGATAGACCATACAAATGTGCACACCCGGGC
TGTGAGAAGGCTTTCACACAACTCTCCAATCTGCAGTCTCACAGACGGCAGCACAACAAAGATAAACCCT
TCAAGTGCCACAACTGTCACCGAGCATATACAGACGCAGCCTCTCTCGAGGCTCACTTATCTACACACAC
AGTGAAACACGCCAAGGTTTATACCTGCACAATCTGCAGTCGGGCATATACATCAGAAACATACCTTATG
AAACATATGCGCAAACACAACCCTCCTGATCTTCAACAGCAAGTGCAAGCAGCGGCAGCAGCAGCAGCGG
TGGCCCAGGCCCAGGCCCAGGCTCAGGCCCAAGCTCAAGCCCAGGCCCAAGCTCAAGCCCAGGCCCAAGC
TCAAGCCCAGGCCCAGGCCCAGGCCCAGGCCCAGGCTTCACAGGCGTCACAGCAGCAGCAGCAGCAGCAG
CCACCGCCACAACCACCACACTTCCAGTCCCCTGGGGCAGCTCCCCAGGGAGGGGGTGGTGGGGACAGCA
ACCCGAACCCTCCACCCCAGTGTTCCTTTGACTTGACCCCCTATAAGCCGGCAGAGCATCATAAAGACAT
CTGCCTCACTGTCACCACCAGCACCATCCAGGTGGAGCACCTGGCCAGCTCTTAG

Translation (554 aa):
MEESHFNSNPYFWPSIPTVSGQIENTMFINKMKDQLLPEKGCGLAPPHYPTLLTVPASVSLSSGISMDTE
SKSEQLTPHSQASVTQNITVVPVPSTGLMTAGVSCSQRWRREGSQSRGPGLVITSPSGSLVTTASAAQTF
PISAPMIVSALPPGSQALQVVPDLSKKVASTLTEEGGGGGGGGGTVAPPKPPRGRKKKRMLESGLPEMND
PYVLAPGDDDDHQKDGKTYRSEGNCGTGNGQSLGLMDSVPGSTTNLLCDPGCRMCSLTFYSKSEMQIHSK
SHTETKPHKCPHCSKTFANSSYLAQHIRIHSGAKPYSCNFCEKSFRQLSHLQQHTRIHTGDRPYKCAHPG
CEKAFTQLSNLQSHRRQHNKDKPFKCHNCHRAYTDAASLEAHLSTHTVKHAKVYTCTICSRAYTSETYLM
KHMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQ
PPPQPPHFQSPGAAPQGGGGGDSNPNPPPQCSFDLTPYKPAEHHKDICLTVTTSTIQVEHLASS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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