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Report for CCDS57319.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57319.1 Public Mus musculus 4 Tmem52 23 108 98 CCDS HistoryNCBI Gene:69671Re-query CCDS DB by CCDS ID:57319.1Re-query CCDS DB by GeneID:69671See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57319.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023920.2 ENSMUSP00000023920.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023920.2Link to Ensembl Protein Viewer:ENSMUSP00000023920.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000023920Re-query CCDS DB by Protein ID:ENSMUSP00000023920
Original member Current member NCBI NM_001253856.1 NP_001240785.1 Accepted alive Link to Nucleotide Sequence:NM_001253856.1Link to Protein Sequence:NP_001240785.1Re-query CCDS DB by Nucleotide ID:NM_001253856Re-query CCDS DB by Protein ID:NP_001240785Link to BLAST:NP_001240785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240785.1 196 Q9D702 196 100% 0 0

Chromosomal Locations for CCDS 57319.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155469145 155469210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155469303 155469346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155469462 155469503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155469989 155470167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155470271 155470530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGGCCCCGGGGCCGTCAGCCACACAGGGGATCCTGCTGCTGCTGCCTCTCCTGCCTCTGTCCCAGGTGA
CGCTGGGTTCCGCGGACCGCAACTGTGACCCCTCGGATCAGTGCCCGCCCCAGGCCCGCTGGAGCAGCCT
ATGGCATGTGGGGCTCATCCTGCTCGCCATACTCCTGATGCTTTTGTGTGGGGTCACAGCCAGCTGTGTA
CGATTCTGCTGCCTCAGGAAGCAGACGCACACCCAGTCACACACGCCAGCGGCGTGGCAGCCCTGTGACG
GGACAGTCATCCCAGTGGACAGTGATAGCCCCGCACACAGCACTGTGACCTCCTACAGTTCCGTGCAGTA
CCCACTGGGCATGCGGCTGCCCCTGTACTTTGGAGAGCCAGACCCTGACTCCATGGTCCCTCCCACCTAC
AGCCTCTATGCGTCTGAGCTGCCACCCTCCTACGATGAAGTTGTGAAGATGATAAAAGCCAGGGAGGAAG
TGGCAGCTCCCTCTGAGAAAACCAACTCTCTGCCTGAGGCCTTGGAGCCAGAGACCACTGGAGGGCCCCA
GGAGCCAGGCCCCAGTGCCCAGCGGCCCTAG

Translation (196 aa):
MAPGPSATQGILLLLPLLPLSQVTLGSADRNCDPSDQCPPQARWSSLWHVGLILLAILLMLLCGVTASCV
RFCCLRKQTHTQSHTPAAWQPCDGTVIPVDSDSPAHSTVTSYSSVQYPLGMRLPLYFGEPDPDSMVPPTY
SLYASELPPSYDEVVKMIKAREEVAAPSEKTNSLPEALEPETTGGPQEPGPSAQRP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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