NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57289.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57289.1 Public Mus musculus 4 Pde4b 23 108 98 CCDS HistoryNCBI Gene:18578Re-query CCDS DB by CCDS ID:57289.1Re-query CCDS DB by GeneID:18578See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57289.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106907.8 ENSMUSP00000102520.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106907.8Link to Ensembl Protein Viewer:ENSMUSP00000102520.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106907Re-query CCDS DB by Protein ID:ENSMUSP00000102520
Original member NCBI NM_001177983.1 NP_001171454.1 Updated not alive Link to Nucleotide Sequence:NM_001177983.1Link to Protein Sequence:NP_001171454.1Re-query CCDS DB by Nucleotide ID:NM_001177983Re-query CCDS DB by Protein ID:NP_001171454
Current member NCBI NM_001177983.2 NP_001171454.1 Accepted alive Link to Nucleotide Sequence:NM_001177983.2Link to Protein Sequence:NP_001171454.1Re-query CCDS DB by Nucleotide ID:NM_001177983Re-query CCDS DB by Protein ID:NP_001171454Link to BLAST:NP_001171454.1

Chromosomal Locations for CCDS 57289.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 102255221 102255456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102487211 102487405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102497622 102497658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102497754 102497824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102505993 102506042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102555619 102555668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGACAGCAAAAAATTCTCCAAAAGAATTTACTGCTTCGGAATCTGAGGTTTGCATAAAGACTTTCAAGG
AGCAGATGCGCTTGGAACTTGAGCTTCCAAAGCTACCAGGAAACAGACCTACATCTCCCAAAATTTCTCC
ACGCAGTTCACCAAGGAATTCACCATGCTTTTTCAGAAAGTTGCTGGTGAATAAAAGCATCCGACAGCGG
CGTCGCTTCACGGTGGCTCATACATGCTTTGATGTGGAAAATGGCCCTTCTCCAGGTCGGAGCCCACTGG
ACCCTCAAGCCGGCTCTTCGTCGGGACTGGTACTTCATGCCGCCTTTCCTGGGCACAGCCAGCGCAGGGA
GTCGTTCCTCTACAGATCTGACAGCGACTATGACTTGTCACCAAAAGCGATGTCCAGGAACTCATCACTT
CCCAGTGAGCAACACGGCGATGACCTGATTGTCACTCCTTTTGCCCAGGTTCTTGCCAGCTTGCGAAGTG
TAAGAAACAACTTCACCCTGCTGACGAACCTTCATGGAGCGCCGAACAAGAGGTCACCAGCGGCTAGTCA
GGCTCCAGTCTCCAGAGTCAGCCTGCAAGTGTGCGACCACAGGAGACTGACGAAATGCAGAGAGAGCAAG
AGATGCTGA

Translation (212 aa):
MTAKNSPKEFTASESEVCIKTFKEQMRLELELPKLPGNRPTSPKISPRSSPRNSPCFFRKLLVNKSIRQR
RRFTVAHTCFDVENGPSPGRSPLDPQAGSSSGLVLHAAFPGHSQRRESFLYRSDSDYDLSPKAMSRNSSL
PSEQHGDDLIVTPFAQVLASLRSVRNNFTLLTNLHGAPNKRSPAASQAPVSRVSLQVCDHRRLTKCRESK
RC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH