NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57276.1 Public Mus musculus 4 Fsd1l 23 108 98 CCDS HistoryNCBI Gene:319636Re-query CCDS DB by CCDS ID:57276.1Re-query CCDS DB by GeneID:319636See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57276.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000132151.7 ENSMUSP00000114931.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000132151.7Link to Ensembl Protein Viewer:ENSMUSP00000114931.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000132151Re-query CCDS DB by Protein ID:ENSMUSP00000114931
Original member Current member NCBI NM_001195284.1 NP_001182213.1 Accepted alive Link to Nucleotide Sequence:NM_001195284.1Link to Protein Sequence:NP_001182213.1Re-query CCDS DB by Nucleotide ID:NM_001195284Re-query CCDS DB by Protein ID:NP_001182213Link to BLAST:NP_001182213.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182213.1 497 Q8BYN5-2 497 100% 0 0

Chromosomal Locations for CCDS 57276.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 53631598 53631612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53646987 53647082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53647670 53647801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53649792 53649893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53655741 53655763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53659513 53659634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53679794 53680003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53682100 53682198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53686388 53686517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53693984 53694084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53694608 53694859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53696890 53696978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53701041 53701163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGGACTCGCAGAAAGAAGCTCTACAAAGAATCATTTCAACTCTGGCAAATAAGAGTGATGAGATTCAGA
ACTTCATTGATACACTAAATCACACACTGAAAGGAGTTCAGGAAAATTCTTCCAACATCCTTTCAGAGTT
GGATGAAGAATTTGATAGCTTGTACTCTATATTGGATGATGTAAAGGAAAGCATGATTAGCACCATCAAG
CAGGAGCAAGTGCGCAAGTCCCAGGAGTTACAGAGTCAGCTCAGTCAATGTAACAATGCCCTGGAGAACT
CTGAGGAACTACTAGAATTTGCAACAAGGTCATTAGATATTAAAGAACCGGAAGAATTTTCAAAGGCTGC
CAGACAGATCAAGGATAGAGTCACAATGGCTTCAGCCTTTCGTCTTTCTTTGAAACCAAAAGTCAGTGAC
AACATGACCCATTTAATGGTGGACTTCTCTCAGGAAAGGCAGATGCTGCAAACTTTGAAGTTTTTGCCAG
TCCCAAAAGCTCCAGAGATTGACCCAGTAGAGTGTTTGGTAGCTGACAACTCTGTAACTGTAGCTTGGAG
AATGCCTGAAGAAGATAATAAAATCGACCATTTCATAATGGAATACAGGAAAACGAACTTTGATGGACTC
CCACGTGTTAAGGATGAGCGATGTTGGGAGGTGATTGATAATATCAAGGGCACTGAATATACATTATCAG
GCTTAAAATTTGATTCAAAGTATATGAATTTCCGAGTGAGAGCATGCAACAAAGCTGTGGCTGGAGACTA
CTCTGACCCAGTGACCCTAGAGACCAGAGCACTTAACTTCAGTCTAGATAACTCATCATCCCATTTGAAT
TTGAAAGTTGAAGATTCCTGTGTAGAATGGGACCCCACTGGAGGAAAAGGCCAAGAAAGTAAAATCAAAG
GGAAGGAGAACAAGGGCAGAAGTGGTACTCCATCCCCAAAACGGACGTCTGTAGGCTCCAGGCCACCAGC
AGTAAGAGGCAGCAGAGACCGTTTTACTGGGGAGTCATACACAGTGCTAGGAGACACTGCTATTGAAAAT
GGACAACATTATTGGGAAGTAAAGGCCCAGAAGGATTGTAAATCCTATAGTGTGGGTGTAGCATATAAAA
CTTTAGGAAAATTTGATCAGTTAGGAAAGACAAATACTAGTTGGTGCGTTCACGTCAACAGCTGGTTACA
GAACACATTTGCAGCCAAGCATAATAATAAGGTGAAAGCTTTGGATGTTCCTGTTCCTGAGAAAATAGGT
GTGTTTTGTGACTTTGATGGGGGTCAGCTTTCATTTTATGATGCACACTCAAAGCAGTTGCTGTATTCCT
TCAAGACAAAATTTACTCAGCCAGTAGTACCTGGTTTCATGGTGTGGTGTGGTGGACTTTCTTTGAGTAC
TGGAATGCAGGTTCCAAGTGCTGTGAGAACACTTCAGAAAAGTGAAAACGGAATGACTGGTTCAACTAGC
AGCCTGAACAATGTCACTCAGTAA

Translation (497 aa):
MDSQKEALQRIISTLANKSDEIQNFIDTLNHTLKGVQENSSNILSELDEEFDSLYSILDDVKESMISTIK
QEQVRKSQELQSQLSQCNNALENSEELLEFATRSLDIKEPEEFSKAARQIKDRVTMASAFRLSLKPKVSD
NMTHLMVDFSQERQMLQTLKFLPVPKAPEIDPVECLVADNSVTVAWRMPEEDNKIDHFIMEYRKTNFDGL
PRVKDERCWEVIDNIKGTEYTLSGLKFDSKYMNFRVRACNKAVAGDYSDPVTLETRALNFSLDNSSSHLN
LKVEDSCVEWDPTGGKGQESKIKGKENKGRSGTPSPKRTSVGSRPPAVRGSRDRFTGESYTVLGDTAIEN
GQHYWEVKAQKDCKSYSVGVAYKTLGKFDQLGKTNTSWCVHVNSWLQNTFAAKHNNKVKALDVPVPEKIG
VFCDFDGGQLSFYDAHSKQLLYSFKTKFTQPVVPGFMVWCGGLSLSTGMQVPSAVRTLQKSENGMTGSTS
SLNNVTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH