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Report for CCDS57271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57271.1 Public Mus musculus 4 Gm21953 23 108 98 CCDS HistoryNCBI Gene:621580Re-query CCDS DB by CCDS ID:57271.1Re-query CCDS DB by GeneID:621580See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57271.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108002.3 ENSMUSP00000103637.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108002.3Link to Ensembl Protein Viewer:ENSMUSP00000103637.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108002Re-query CCDS DB by Protein ID:ENSMUSP00000103637
Original member Current member EBI ENSMUST00000238203.1 ENSMUSP00000158629.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238203.1Link to Ensembl Protein Viewer:ENSMUSP00000158629.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238203Re-query CCDS DB by Protein ID:ENSMUSP00000158629
Original member Current member NCBI NM_001177580.1 NP_001171051.1 Accepted alive Link to Nucleotide Sequence:NM_001177580.1Link to Protein Sequence:NP_001171051.1Re-query CCDS DB by Nucleotide ID:NM_001177580Re-query CCDS DB by Protein ID:NP_001171051Link to BLAST:NP_001171051.1

Chromosomal Locations for CCDS 57271.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 42294267 42294313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42294525 42294584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42294699 42294855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (264 nt):
ATGTCGCGATTGAGGAGATACGAGGTGGCGCTGGAAGCGGAGGAGGAGATCTACTGGGGCTGCTTCTACT
TTTTTCCTCGGTTGCGAATGTGGCGCAGGGAGCGGAGCTCGGCGCACCCCCGGGAGCAGAAGCTGGAGCC
TCTGCGGGGCCTAATGAGCTGTTTGTCGAGCGGCCTGAGGCCTGCTCCCCAGCGCTCGGGTCGTGGTCTC
CTCTGTCGCACCCCCACCGCTGCTGCACAGACAGCCGGTGCATTAAAGATTTAA

Translation (87 aa):
MSRLRRYEVALEAEEEIYWGCFYFFPRLRMWRRERSSAHPREQKLEPLRGLMSCLSSGLRPAPQRSGRGL
LCRTPTAAAQTAGALKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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