NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57266.1 Public Mus musculus 4 Arid3c 23 108 98 CCDS HistoryNCBI Gene:550619Re-query CCDS DB by CCDS ID:57266.1Re-query CCDS DB by GeneID:550619See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57266.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000150809.2 ENSMUSP00000116411.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150809.2Link to Ensembl Protein Viewer:ENSMUSP00000116411.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000150809Re-query CCDS DB by Protein ID:ENSMUSP00000116411
Original member NCBI NM_001252622.1 NP_001239551.1 Updated not alive Link to Nucleotide Sequence:NM_001252622.1Link to Protein Sequence:NP_001239551.1Re-query CCDS DB by Nucleotide ID:NM_001252622Re-query CCDS DB by Protein ID:NP_001239551
Current member NCBI NM_001252622.2 NP_001239551.1 Accepted alive Link to Nucleotide Sequence:NM_001252622.2Link to Protein Sequence:NP_001239551.1Re-query CCDS DB by Nucleotide ID:NM_001252622Re-query CCDS DB by Protein ID:NP_001239551Link to BLAST:NP_001239551.1

Chromosomal Locations for CCDS 57266.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41724233 41724333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41725007 41725189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41725746 41726035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41726149 41726332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41728054 41728126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41729885 41730193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGAGGCCCTGCAGAGGCAGCAGGCAGCACGGCTGGCCCAAGGGGTGGGGCCCTTGGCCCCTCCACGCT
TACCGCTTCCACAACCTCCTCTGCTTGGCGCCCGGACCCTACAGGCTCCTGAGGGGGCTATAGGGGTGGT
TGGGGCTGAAGAAGAGGAGGGTGCTGAAGATGAGGAGGGAGAGACACCCTTAGCAGAAGAGGAGACAGCT
GAGCAGAGCCATCCAGGAGCCCGATGTCCCAACTCACCTTCCAGCCAGTCTCCTGGAATCCAACCACATG
AGTGGACCTACGAGGAACAGTTCAAGCAGCTGTATGAACTCGATGCGGACCCCAAGAGGAAGGAGTTTCT
GGATGACCTATTTAGCTTCATGCAGAAGAGGGGTACGCCAGTGAACCGGGTACCCATCATGGCCAAACAG
GTGCTGGATCTGTATGCGTTGTTTCGCTTGGTGACAGCCAAGGGAGGCCTGGTGGAAGTCATCAACCGAA
AAGTGTGGCGAGAAGTCACACGCGGCCTCAGTTTGCCCACCACCATCACCTCTGCCGCCTTCACGCTCCG
TACACAGTACATGAAGTATTTGTACCCATACGAGTGCGAGACACGGGCACTCAGTTCCCCAGGGGAGCTT
CAGGCTGCCATAGACAGCAACAGGCGTGAGGGCCGCCGCCAGGCTTACACCGCGGTCCCGCTCTTCAACT
TAGCAGGGCCCACACCTCGGGGCGCTCCTGGCCCCGCCTCGAGTCATGGGCCCGCCCCGACCGCGACCCC
GAACTGCCCGGGTCCCACCCAGGGTTCTGCTTCTGGTTTACCAGCGCACGCTTGCGCTCAACTGAGCCCG
AGCCCAGTAAAGAAAGAGGAGAGTGGAATCCCACCCCCTCGTCTGGCGCTACCTATGGGCTTGGCCTCGG
AAGCTACAAGGGAGAAGCTGGCACCGGAAGAACCTCCGGAGAAGAGGGCTGTGCTAATGGGCCCCGTGGA
CTCACCTCGACTGGGGGCACCCCCCAGTTTCCTGCCCCGTGGCAAGGCTCCCCTAAGGGGTATCCTCTTT
GCTCGACGCCAACCTGTGCCAGCTTCCTTGGGTCCAACCAATCCTCCACCTCTACCCTCTACAGGGCCCC
CTTCCAGTACCTTGCCCTGA

Translation (379 aa):
MEALQRQQAARLAQGVGPLAPPRLPLPQPPLLGARTLQAPEGAIGVVGAEEEEGAEDEEGETPLAEEETA
EQSHPGARCPNSPSSQSPGIQPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQ
VLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPGEL
QAAIDSNRREGRRQAYTAVPLFNLAGPTPRGAPGPASSHGPAPTATPNCPGPTQGSASGLPAHACAQLSP
SPVKKEESGIPPPRLALPMGLASEATREKLAPEEPPEKRAVLMGPVDSPRLGAPPSFLPRGKAPLRGILF
ARRQPVPASLGPTNPPPLPSTGPPSSTLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH