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Report for CCDS57254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57254.1 Public Mus musculus 3 Sars1 23 108 98 CCDS HistoryNCBI Gene:20226Re-query CCDS DB by CCDS ID:57254.1Re-query CCDS DB by GeneID:20226See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57254.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090553.11 ENSMUSP00000088041.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090553.11Link to Ensembl Protein Viewer:ENSMUSP00000088041.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090553Re-query CCDS DB by Protein ID:ENSMUSP00000088041
Original member Current member NCBI NM_001204979.1 NP_001191908.1 Accepted alive Link to Nucleotide Sequence:NM_001204979.1Link to Protein Sequence:NP_001191908.1Re-query CCDS DB by Nucleotide ID:NM_001204979Re-query CCDS DB by Protein ID:NP_001191908Link to BLAST:NP_001191908.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191908.1 512 P26638 512 100% 0 0

Chromosomal Locations for CCDS 57254.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108426830 108426981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108427260 108427389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108428174 108428331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108428606 108428735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108429241 108429462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108431465 108431620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108433018 108433161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108434049 108434207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108435886 108435966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108437509 108437579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108444997 108445132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGTGCTGGACCTGGATTTGTTTCGGGTGGATAAAGGAGGGGACCCAGCCCTCATTCGAGAGACGCAGG
AGAAGCGCTTCAAGGACCCGGGGCTGGTGGACCAGCTGGTGAAAGCAGACAGTGAGTGGCGACGATGCAG
ATTTCGGGCAGACAACTTGAACAAGCTGAAGAATTTATGCAGCAAAACTATTGGGGAGAAAATGAAGAAA
AAGGAAGCAGTGGGAGACGACGAGTCCGTCCCAGAGAACGTGCTGAATTTCGATGACCTCACTGCAGACG
CGCTAGCTGCCCTGAAAGTCTCACAGATTAAAAAAGTCCGACTCCTCATTGATGAAGCCATCCAGAAGTG
TGATGGGGAGCGGGTAAAGCTGGAAGCAGAGCGATTTGAGAACCTCCGCGAGATTGGGAACCTTCTGCAC
CCCTCTGTGCCCATTAGTAATGATGAGGACGCAGACAACAAAGTAGAACGTATTTGGGGAGATTGTACAG
TCAGGAAGAAGTATTCCCATGTGGACCTGGTGGTGATGGTAGATGGCTTTGAAGGCGAAAAGGGAGCCGT
GGTGGCTGGTAGTCGGGGGTACTTCCTGAAGGGGCCCCTGGTGTTCCTGGAGCAGGCGCTTATCCAATAT
GCACTGCGTACCTTGGGGAGTCGGGGCTACACTCCAATCTACACCCCCTTCTTCATGAGGAAAGAGGTCA
TGCAGGAAGTGGCCCAGCTCAGCCAGTTTGATGAAGAACTTTATAAGGTGATTGGCAAAGGCAGCGAAAA
GTCAGATGACAACTCCTATGACGAGAAATACTTGATTGCCACCTCAGAGCAGCCCATCGCGGCTCTGCAC
CGGGACGAGTGGCTGCGGCCAGAGGATCTGCCCATCAAGTACGCTGGCCTCTCCACCTGCTTTCGTCAGG
AAGTGGGCTCGCATGGCCGTGACACCCGTGGTATCTTCCGAGTCCATCAGTTTGAGAAGATTGAGCAGTT
TGTGTACTCATCGCCCCATGACAATAAGTCGTGGGAGATGTTTGATGAGATGATCGCCACCGCAGAAGAA
TTCTACCAGTCTTTGGGGATCCCTTACCACATTGTGAATATTGTCTCAGGCTCCTTGAATCACGCTGCCA
GTAAGAAGCTCGACCTGGAGGCCTGGTTCCCAGGCTCGGGTGCCTTCCGTGAGTTGGTGTCCTGTTCTAA
TTGCACGGATTACCAAGCTCGCCGCCTGAGAATCCGATATGGGCAGACCAAGAAGATGATGGACAAGGTG
GAGTTTGTCCATATGCTTAATGCTACAATGTGTGCTACCACCCGGACCATCTGCGCCATCCTGGAGAACT
ACCAGGCAGAGAAGGGCATCGCTGTGCCAGAGAAGTTGAGGGAGTTCATGCCGCCAGGGCTCCAAGAGCT
GATCCCGTTTGTGAAGCCTGCACCCATTGACCAGGAGCCATCTAAGAAGCAGAAGAAGCAACATGAAGGC
AGCAAAAAGAAAGCGAAAGAGGTCCCCCTGGAGAACCAGCTGCAGAGCATGGAGGTCACTGAGGCCTGA

Translation (512 aa):
MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKK
KEAVGDDESVPENVLNFDDLTADALAALKVSQIKKVRLLIDEAIQKCDGERVKLEAERFENLREIGNLLH
PSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGPLVFLEQALIQY
ALRTLGSRGYTPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALH
RDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFDEMIATAEE
FYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV
EFVHMLNATMCATTRTICAILENYQAEKGIAVPEKLREFMPPGLQELIPFVKPAPIDQEPSKKQKKQHEG
SKKKAKEVPLENQLQSMEVTEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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