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Report for CCDS57226.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57226.1 Public Mus musculus 3 Sprr2f 23 108 98 CCDS HistoryNCBI Gene:20760Re-query CCDS DB by CCDS ID:57226.1Re-query CCDS DB by GeneID:20760See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57226.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050397.1 ENSMUSP00000050902.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050397.1Link to Ensembl Protein Viewer:ENSMUSP00000050902.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000050397Re-query CCDS DB by Protein ID:ENSMUSP00000050902
Original member NCBI NM_011472.2 NP_035602.1 Updated not alive Link to Nucleotide Sequence:NM_011472.2Link to Protein Sequence:NP_035602.1Re-query CCDS DB by Nucleotide ID:NM_011472Re-query CCDS DB by Protein ID:NP_035602
Current member NCBI NM_011472.3 NP_035602.1 Accepted alive Link to Nucleotide Sequence:NM_011472.3Link to Protein Sequence:NP_035602.1Re-query CCDS DB by Nucleotide ID:NM_011472Re-query CCDS DB by Protein ID:NP_035602Link to BLAST:NP_035602.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035602.1 76 O70557 76 100% 0 0

Chromosomal Locations for CCDS 57226.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 92365896 92366126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (231 nt):
ATGTCTTACCAAGAACAGCAGTGCAAGCAACCCTGCCAGCCTCCTCCTGTGTGTCCACCACCAAAGTGCC
CAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGA
GCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCCTGCCAGCAGAAG
TGCCCACCCAAGAGCAAGTGA

Translation (76 aa):
MSYQEQQCKQPCQPPPVCPPPKCPEPCSPSVCPEPCPPPKCPEPCPEPCPPPSFQQKCPPVQPPPPCQQK
CPPKSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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