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Report for CCDS57188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57188.1 Public Mus musculus 2 Zmynd8 23 108 98 CCDS HistoryNCBI Gene:228880Re-query CCDS DB by CCDS ID:57188.1Re-query CCDS DB by GeneID:228880See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57188.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109266.10 ENSMUSP00000104889.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109266.10Link to Ensembl Protein Viewer:ENSMUSP00000104889.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000109266Re-query CCDS DB by Protein ID:ENSMUSP00000104889
Original member Current member NCBI NM_001252585.1 NP_001239514.1 Accepted alive Link to Nucleotide Sequence:NM_001252585.1Link to Protein Sequence:NP_001239514.1Re-query CCDS DB by Nucleotide ID:NM_001252585Re-query CCDS DB by Protein ID:NP_001239514Link to BLAST:NP_001239514.1

Chromosomal Locations for CCDS 57188.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 165785590 165785738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165787164 165787247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165791905 165791971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165792804 165792967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165794395 165794634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165796083 165796161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165797934 165798014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165805187 165805377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165807675 165807929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165812349 165812858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165815317 165815469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165820542 165820688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165828208 165828689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165833309 165833424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165834890 165834967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165837281 165837336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165838812 165838899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165839998 165840090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165842764 165842877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165846021 165846239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165852000 165852148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165858055 165858139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3600 nt):
ATGTCTGCCGCCGGGAGCTTGCTACTGTCCTCTTTTGGAACAGAGGAGCCAGGCTCTCTAAGCGGCCAAG
CTGCCTCTATGGCGGATCCTGTCTCTACAGAGAAAACGGCCCCGAAACGGAGGTTCCCCAGCCCTCCACA
TTCCTCCAATGGCCATTCGCCCCAAGACTCATCCACGAGCCCCATTAAAAAGAAAAAGAAACCCGGCTTA
CTCAACAGTAGCAATAAGGAACAGTCAGAGCTAAGACATGGTCCGTTTTACTATATGAAGCAGCCACTCA
CCACAGACCCTGTTGATGTTGTACCGCAGGACGGACGGAATGACTTCTATTGCTGGGTTTGTCACCGGGA
AGGACAAGTCCTTTGCTGTGAGCTCTGTCCCCGGGTTTATCACGCTAAGTGTCTGAGACTGACATCGGAG
CCAGAGGGGGACTGGTTTTGTCCTGAATGTGAGAAGATTACAGTAGCAGAATGCATCGAGACGCAGAGCA
AAGCCATGACCATGCTGACCATTGAACAACTGTCCTACCTGCTCAAGTTTGCCATTCAGAAAATGAAGCA
GCCAGGGACGGATGCATTCCAGAAGCCTGTTCCATTGGAGCAACACCCTGACTATGCAGAATATATTTTC
CACCCCATGGACCTTTGTACATTGGAAAAGAATGCAAAAAAGAAGATGTACGGCTGCACAGAAGCCTTCC
TGGCCGATGCCAAGTGGATCCTGCACAACTGCATTATTTATAATGGGGGAAATCACAAGTTGACGCAAAT
AGCAAAAGTCGTCATCAAAATCTGTGAGCACGAGATGAATGAAATCGAAGTCTGTCCAGAATGTTATCTT
GCAGCTTGCCAAAAACGAGACAACTGGTTCTGTGAGCCCTGTAGCAATCCGCACCCTTTGGTCTGGGCAA
AACTGAAAGGATTTCCATTCTGGCCAGCGAAAGCTCTGAGGGACAAAGACGGGCAGGTTGACGCCCGTTT
CTTTGGACAACATGACAGAGCCTGGGTTCCAGTCAATAATTGCTACCTCATGTCTAAAGAAATCCCCTTT
TCTGTGAAAAAGACTAAAAGTATCTTCAACAGCGCCATGCAAGAGATGGAAGTTTACGTGGAGAACATAC
GGAGGAAGTTTGGGGTTTTTAATTACTCCCCGTTCAGGACGCCCTACACGCCCAACAACCAGTACCAAAT
GCTGCTGGATCCCAGCAACCCCAGCGCGGGCACAGCCAAGACAGACAAACAGGAGAAGGTGAAGCTTAAT
TTTGACATGACAGCGTCCCCCAAGATCCTTCTGAGCAAGCCCCTTCTGAGCGGGGGTGCCGGCCGCAGGA
TCTCCCTGTCCGACATGCCTCGCTCCCCCACCAGTACGAACTCTTCCGTGCACACGGGCTCCGATGTGGA
GCAGGACCCCGAGAAGAAGGCCCCGTCCAGCCACTTCAGCGCAAGCGAGGAGTCCATGGACTTCCTTGAT
AAGAGCACAGCTTCTCCAGCCTCCACCAAGACGGGGCAAGCCGGGAGCTTGTCTGGCAGCCCAAAGCCTT
TCTCTCCGCAAGCGCCGACACCCATCATGACAAAACCCGACAAGACTTCCACCTCCACCACCGGGAGCAT
CCTGAACCTGAACTTGGATCGAAGCAAGGCCGAGATGGACCTGAAGGAGCTGAGCGAGTCGGTCCAGCAG
CAGTCAGCCCCCGTCCCTCTCATCTCTCCCAAGCGGCAGATTCGAAGCCGGTTCCAGCTCAACCTGGACA
AGACCATAGAGAGTTGCAAAGCACAGCTAGGCATAAATGAGATCTCAGAGGATGTTTATACAGCCGTGGA
GCACAGCGATTCCGAGGACTCCGAAAAGTCGGAGAGCAGCGACAGCGAGTACGTCAGCGATGAGGAACAG
AAGCCCAAGAATGAGCCCGAGGACCCCGAGGACAAAGAGGGGAGTCGGGTGGACAAAGAGGCCCCTGCCA
TCAAAAGGAAGCCCAAACCCACAAACCAGGTAGAGGTCAAAGAGGAAGCGAAGAGCAACTCTCCTGTCAG
CGAGAAGCCGGACCCCACACCCGCCAAGGACAAGGCCAGCCCAGAGCCTGAGAAGGACTTTGTAGAGAAA
GCAAAGCCATCACCTCATCCCACAAAGGACAAACTGAAAGGAAAGGATGAAACGGATTCTCCCACAGTGC
ACTTGGGCTTGGATTCGGACTCGGAGAGCGAACTTGTCATAGACTTAGGAGAGGATCCTTCTGGGAGGGA
GGGTCGAAAAAACAAGAAAGATCCCAAGGTGCCGTCGCCTAAGCAAGACGCTATAGGTAAACCGCCACCG
TCGTCCACTTCGGCGGGCAACCAGTCTCCCCCAGAGACACCGGTACTCACCCGCTCAGCCACCCAAGCAC
CCGCGGCTGGGGTCACCGTGGCCGCCGCCACCACCAGCACGATGTCTACCGTCACAGTCACGGCACCGGC
CACCGCCGTCACGGGAAGCCCGGTGAAGAAGCAGAGGCCGCTCTTACCGAAGGAGACTGTCCCAGCTGTG
CAGCGGGTCGTGTGGAACGCATCAACTGTCCAGCAGAAGGAGGTCACCCAGAGCCCATCCACGTCCACCA
TCACGCTGGTGACCAGCACACAGCCGGCAGCCCTGGTCAGCAGTTCGGGCTCAGCAAGCACCCTGGCGTC
TGCAATCAATGCCGACCTTCCCATTGCCACCGCCTCGGCCGACGTGGCCGCAGACATTGCCAAGTACACC
AGCAAAATGATGGATGCCATAAAGGGGACGATGACAGAAATCTACAATGACCTCTCCAAGAACACCACTG
GGAGCACAATAGCTGAGATTCGAAGGCTGAGGATTGAGATTGAGAAACTGCAGTGGCTGCACCAGCAGGA
GCTCGCTGAGATGAAGCACAACCTGGAGTTGACCATGGCCGAGATGCGGCAGAGCCTGGAACAGGAGCGG
GATCGGCTCATTGCCGAGGTGAAAAAGCAACTGGAGCTGGAGAAGCAGCAGGCGGTGGACGAGACCAAGA
AGAAGCAGTGGTGTGCCAACTGCAAGAAGGAGGCCATTTTCTACTGCTGCTGGAACACCAGCTACTGTGA
CTACCCCTGTCAGCAGGCCCACTGGCCCGAGCACATGAAGTCCTGTACCCAGTCGGCGACTGCCCCTCAG
CAGGAAGCAGATGCCGAGGCAAGCACAGAAACAGGAAATAAGTCATCGCAGGGCAACTCCTCCAACACAC
AGTCAGCACCTTCAGAACCGGCCAGCGCCCCCAAAGAGAAAGAGGCGCCAGCGGAGAAGAGCAAGGACAG
TAGTAACTCGACCCTGGATCTTTCCGGCTCCAGAGAGACGCCCTCCTCTATGCTCTTAGGCTCCAATCAA
AGCTCTGTTAGCAAGAGGTGTGACAAGCAGCCTGCCTATACCCCAACCACTACAGACCACCAGCCGCACC
CCAACTACCCAGCCCAGAAGTACCATTCCCGGAGCAGCAAGGCAGGTTTGTGGAGCAGCAGCGAGGAGAA
GCGAGCGTCATCCCGCTCTGAGCACAGTGGAGGGACCAGCACGAAGAACCTCATGCCCAAAGAGTCCCGG
GAGTCTCGGCTAGATGCCTTCTGGGACTAG

Translation (1199 aa):
MSAAGSLLLSSFGTEEPGSLSGQAASMADPVSTEKTAPKRRFPSPPHSSNGHSPQDSSTSPIKKKKKPGL
LNSSNKEQSELRHGPFYYMKQPLTTDPVDVVPQDGRNDFYCWVCHREGQVLCCELCPRVYHAKCLRLTSE
PEGDWFCPECEKITVAECIETQSKAMTMLTIEQLSYLLKFAIQKMKQPGTDAFQKPVPLEQHPDYAEYIF
HPMDLCTLEKNAKKKMYGCTEAFLADAKWILHNCIIYNGGNHKLTQIAKVVIKICEHEMNEIEVCPECYL
AACQKRDNWFCEPCSNPHPLVWAKLKGFPFWPAKALRDKDGQVDARFFGQHDRAWVPVNNCYLMSKEIPF
SVKKTKSIFNSAMQEMEVYVENIRRKFGVFNYSPFRTPYTPNNQYQMLLDPSNPSAGTAKTDKQEKVKLN
FDMTASPKILLSKPLLSGGAGRRISLSDMPRSPTSTNSSVHTGSDVEQDPEKKAPSSHFSASEESMDFLD
KSTASPASTKTGQAGSLSGSPKPFSPQAPTPIMTKPDKTSTSTTGSILNLNLDRSKAEMDLKELSESVQQ
QSAPVPLISPKRQIRSRFQLNLDKTIESCKAQLGINEISEDVYTAVEHSDSEDSEKSESSDSEYVSDEEQ
KPKNEPEDPEDKEGSRVDKEAPAIKRKPKPTNQVEVKEEAKSNSPVSEKPDPTPAKDKASPEPEKDFVEK
AKPSPHPTKDKLKGKDETDSPTVHLGLDSDSESELVIDLGEDPSGREGRKNKKDPKVPSPKQDAIGKPPP
SSTSAGNQSPPETPVLTRSATQAPAAGVTVAAATTSTMSTVTVTAPATAVTGSPVKKQRPLLPKETVPAV
QRVVWNASTVQQKEVTQSPSTSTITLVTSTQPAALVSSSGSASTLASAINADLPIATASADVAADIAKYT
SKMMDAIKGTMTEIYNDLSKNTTGSTIAEIRRLRIEIEKLQWLHQQELAEMKHNLELTMAEMRQSLEQER
DRLIAEVKKQLELEKQQAVDETKKKQWCANCKKEAIFYCCWNTSYCDYPCQQAHWPEHMKSCTQSATAPQ
QEADAEASTETGNKSSQGNSSNTQSAPSEPASAPKEKEAPAEKSKDSSNSTLDLSGSRETPSSMLLGSNQ
SSVSKRCDKQPAYTPTTTDHQPHPNYPAQKYHSRSSKAGLWSSSEEKRASSRSEHSGGTSTKNLMPKESR
ESRLDAFWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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