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Report for CCDS57181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57181.1 Public Mus musculus 2 Pax6 23 108 98 CCDS HistoryNCBI Gene:18508Re-query CCDS DB by CCDS ID:57181.1Re-query CCDS DB by GeneID:18508See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57181.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090397.12 ENSMUSP00000087878.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090397.12Link to Ensembl Protein Viewer:ENSMUSP00000087878.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000090397Re-query CCDS DB by Protein ID:ENSMUSP00000087878
Original member Current member EBI ENSMUST00000111082.7 ENSMUSP00000106711.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111082.7Link to Ensembl Protein Viewer:ENSMUSP00000106711.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111082Re-query CCDS DB by Protein ID:ENSMUSP00000106711
Original member Current member EBI ENSMUST00000111083.9 ENSMUSP00000106712.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111083.9Link to Ensembl Protein Viewer:ENSMUSP00000106712.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111083Re-query CCDS DB by Protein ID:ENSMUSP00000106712
Original member Current member EBI ENSMUST00000111087.9 ENSMUSP00000106716.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111087.9Link to Ensembl Protein Viewer:ENSMUSP00000106716.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111087Re-query CCDS DB by Protein ID:ENSMUSP00000106716
Original member Current member NCBI NM_001244201.2 NP_001231130.1 Accepted alive Link to Nucleotide Sequence:NM_001244201.2Link to Protein Sequence:NP_001231130.1Re-query CCDS DB by Nucleotide ID:NM_001244201Re-query CCDS DB by Protein ID:NP_001231130Link to BLAST:NP_001231130.1
Original member Current member NCBI NM_001244202.2 NP_001231131.1 Accepted alive Link to Nucleotide Sequence:NM_001244202.2Link to Protein Sequence:NP_001231131.1Re-query CCDS DB by Nucleotide ID:NM_001244202Re-query CCDS DB by Protein ID:NP_001231131Link to BLAST:NP_001231131.1
Original member Current member NCBI NM_001310144.1 NP_001297073.1 Accepted alive Link to Nucleotide Sequence:NM_001310144.1Link to Protein Sequence:NP_001297073.1Re-query CCDS DB by Nucleotide ID:NM_001310144Re-query CCDS DB by Protein ID:NP_001297073Link to BLAST:NP_001297073.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001231130.1 422 P63015-1 422 100% 0 0
NP_001231131.1 422 P63015-1 422 100% 0 0
NP_001297073.1 422 P63015-1 422 100% 0 0

Chromosomal Locations for CCDS 57181.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 105680298 105680307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105683828 105683958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105684887 105685102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105685778 105685943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105691565 105691723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105692194 105692276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105692470 105692620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105692737 105692852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105695306 105695456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105696270 105696355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGCAGAACAGTCACAGCGGAGTGAATCAGCTTGGTGGTGTCTTTGTCAACGGGCGGCCACTGCCGGACT
CCACCCGGCAGAAGATCGTAGAGCTAGCTCACAGCGGGGCCCGGCCGTGCGACATTTCCCGAATTCTGCA
GGTATCCAACGGTTGTGTGAGTAAAATTCTGGGCAGGTATTACGAGACTGGCTCCATCAGACCCAGGGCA
ATCGGAGGGAGTAAGCCAAGAGTGGCGACTCCAGAAGTTGTAAGCAAAATAGCCCAGTATAAACGGGAGT
GCCCTTCCATCTTTGCTTGGGAAATCCGAGACAGATTATTATCCGAGGGGGTCTGTACCAACGATAACAT
ACCCAGTGTGTCATCAATAAACAGAGTTCTTCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGAC
GGCATGTATGATAAACTAAGGATGTTGAACGGGCAGACCGGAAGCTGGGGCACACGCCCTGGTTGGTATC
CCGGGACTTCAGTACCAGGGCAACCCACGCAAGATGGCTGCCAGCAACAGGAAGGAGGGGGAGAGAACAC
CAACTCCATCAGTTCTAACGGAGAAGACTCGGATGAAGCTCAGATGCGACTTCAGCTGAAGCGGAAGCTG
CAAAGAAATAGAACATCTTTTACCCAAGAGCAGATTGAGGCTCTGGAGAAAGAGTTTGAGAGGACCCATT
ATCCAGATGTGTTTGCCCGGGAAAGACTAGCAGCCAAAATAGATCTACCTGAAGCAAGAATACAGGTATG
GTTTTCTAATCGAAGGGCCAAATGGAGAAGAGAAGAGAAACTGAGGAACCAGAGAAGACAGGCCAGCAAC
ACTCCTAGTCACATTCCTATCAGCAGCAGCTTCAGTACCAGTGTCTACCAGCCAATCCCACAGCCCACCA
CACCTGTCTCCTCCTTCACATCAGGTTCCATGTTGGGCCGAACAGACACCGCCCTCACCAACACGTACAG
TGCTTTGCCACCCATGCCCAGCTTCACCATGGCAAACAACCTGCCTATGCAACCCCCAGTCCCCAGTCAG
ACCTCCTCATACTCGTGCATGCTGCCCACCAGCCCGTCAGTGAATGGGCGGAGTTATGATACCTACACCC
CTCCGCACATGCAAACACACATGAACAGTCAGCCCATGGGCACCTCGGGGACCACTTCAACAGGACTCAT
TTCACCTGGAGTGTCAGTTCCCGTCCAAGTTCCCGGGAGTGAACCTGACATGTCTCAGTACTGGCCTCGA
TTACAGTAA

Translation (422 aa):
MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRA
IGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGAD
GMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKL
QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASN
TPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQ
TSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPR
LQ


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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