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Report for CCDS57166.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57166.1 Public Mus musculus 2 Ciz1 23 108 98 CCDS HistoryNCBI Gene:68379Re-query CCDS DB by CCDS ID:57166.1Re-query CCDS DB by GeneID:68379See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57166.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113332.7 ENSMUSP00000108958.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113332.7Link to Ensembl Protein Viewer:ENSMUSP00000108958.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113332Re-query CCDS DB by Protein ID:ENSMUSP00000108958
Original member NCBI NM_001252537.1 NP_001239466.1 Updated not alive Link to Nucleotide Sequence:NM_001252537.1Link to Protein Sequence:NP_001239466.1Re-query CCDS DB by Nucleotide ID:NM_001252537Re-query CCDS DB by Protein ID:NP_001239466
Current member NCBI NM_001252537.2 NP_001239466.1 Accepted alive Link to Nucleotide Sequence:NM_001252537.2Link to Protein Sequence:NP_001239466.1Re-query CCDS DB by Nucleotide ID:NM_001252537Re-query CCDS DB by Protein ID:NP_001239466Link to BLAST:NP_001239466.1
Original member NCBI NM_001252538.1 NP_001239467.1 Updated not alive Link to Nucleotide Sequence:NM_001252538.1Link to Protein Sequence:NP_001239467.1Re-query CCDS DB by Nucleotide ID:NM_001252538Re-query CCDS DB by Protein ID:NP_001239467
Current member NCBI NM_001252538.2 NP_001239467.1 Accepted alive Link to Nucleotide Sequence:NM_001252538.2Link to Protein Sequence:NP_001239467.1Re-query CCDS DB by Nucleotide ID:NM_001252538Re-query CCDS DB by Protein ID:NP_001239467Link to BLAST:NP_001239467.1

Chromosomal Locations for CCDS 57166.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32363810 32363979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32364219 32364334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32365803 32365874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32367303 32367532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32370047 32370125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32370242 32370344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32370864 32371101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32371249 32371408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32371636 32371757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32372298 32372495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32374342 32374466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32375485 32375572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32376009 32376122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32376266 32376427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32377293 32377362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32377509 32377630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32377964 32378170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2376 nt):
ATGTTCAACCCGCAACTCCAGCAGCAGCAACAGTTGCAGCAGCAGCAGCAACAGTTGCAGCAGCAGCTCC
AGCAGCAGCAGCTCCAGCAGCAGCAACAGCAGATACTGCAGCTCCAACAGCTGCTGCAACAGTCCCCACC
ACAGGCCTCCTTGTCCATTCCTGTCAGCCGGGGCCTCCCCCAGCAGTCATCCCCGCAACAGCTTCTGAGT
CTCCAGGGCCTCCACTCGACCTCCCTGCTCAATGGCCCCATGCTGCAAAGAGCTTTGCTCCTACAGCAGT
TGCAAGGACTGGACCAGTTTGCAATGCCACCAGCCACGTATGACGGTGCCAGCCTCACCATGCCTACGGC
AACACTGGGTAACCTCCGTGCTTTCAATGTGACAGCCCCAAGCCTAGCAGCTCCCAGCCTTACACCACCC
CAGATGGTCACCCCAAATCTGCAGCAGTTCTTTCCCCAGGCTACTCGACAGTCTCTGCTGGGGCCTCCTC
CTGTTGGGGTCCCAATAAACCCTTCTCAGCTCAACCACTCAGGGAGGAACACCCAGAAACAGGCCAGAAC
CCCCTCTTCCACCACCCCCAATCGCAAGACGGTGCCTCTGGAAGACAGGGAAGACCCCACAGAGGGGTCT
GAGGAAGCCACGGAGCTCCAGATGGACACATGTGAAGACCAAGATTCACTAGTCGGTCCAGATAGCATGC
TGAGTGAGCCCCAAGTGCCTGAGCCTGAGCCCTTTGAGACATTGGAACCACCAGCCAAGAGGTGCAGGAG
CTCAGAGGAGTCCACCGAGAAAGGCCCTACAGGGCAGCCACAAGCAAGGGTCCAGCCTCAGACCCAGATG
ACAGCACCAAAGCAGACACAGACCCCGGATCGGCTGCCTGAGCCACCAGAAGTCCAAATGCTGCCGCGTA
TCCAGCCACAGGCACTGCAGATCCAGACCCAGCCAAAGCTGCTGAGGCAGGCACAGACACAGACCTCTCC
AGAGCACTTAGCGCCCCAGCAGGATCAGGTACCCACCCAAGCACAGTCACAGGAGCAGACATCAGAGAAG
ACCCAGGACCAGCCTCAGACCTGGCCACAGGGGTCAGTACCCCCACCAGAACAAGCGTCAGGTCCAGCCT
GTGCCACGGAACCACAGCTATCCTCTCACGCTGCAGAAGCTGGGAGTGACCCAGACAAGGCCTTGCCAGA
ACCAGTAAGTGCCCAGAGCAGTGAAGACAGGAGCCGGGAGGCGTCCGCTGGTGGCCTGGATTTGGGAGAA
TGTGAAAAGAGAGCGGGAGAGATGCTGGGGATGTGGGGGGCTGGGAGCTCCCTGAAGGTCACCATCCTGC
AGAGTAGCAACAGCCGGGCCTTTAACACCACACCCCTCACATCTGGACCTCGCCCTGGGGACTCTACCTC
TGCCACCCCTGCCATTGCCAGCACACCCTCCAAGCAAAGCCTCCAGTTCTTCTGCTACATCTGCAAGGCC
AGCAGCAGCAGCCAGCAGGAGTTCCAGGATCACATGTCAGAGGCTCAGCACCAACAGCGGCTTGGGGAAA
TACAACACTCGAGCCAGACCTGCCTGCTGTCCCTGCTGCCCATGCCTCGGGACATCCTGGAGAAAGAAGC
GGAAGATCCTCCGCCCAAACGCTGGTGCAACACCTGCCAGGTGTACTACGTGGGAGACTTGATCCAGCAC
CGTAGGACACAGGAGCACAAGGTTGCCAAACAATCCCTGAGGCCCTTCTGCACCATATGCAACCGTTACT
TCAAGACCCCTCGAAAGTTTGTGGAGCACGTGAAGTCCCAGGGACACAAGGACAAGGCCCAAGAGCTGAA
GACACTTGAAAAGGAGACAGGCAGCCCAGATGAGGACCACTTCATCACTGTGGACGCCGTCGGTTGCTTT
GAGAGTGGTCAAGAAGAGGACGAGGATGACGACGAGGAAGAAGAAGAAGAAGGAGAGATTGAGGCTGAGG
AGGAATTCTGCAAGCAGGTGAAGCCGAGAGAAACATCCTCAGAGCAAGGGAAGGGCTCTGAGACGTACAA
CCCCAACACAGCCTATGGTGAGGATTTCCTGGTGCCAGTGATGGGCTATGTCTGTCAAATCTGTCACAAG
TTCTACGACAGCAACTCAGAATTGCGGCTTTCTCACTGCAAGTCCCTGGCCCACTTTGAGAACCTGCAGA
AATACAAAGCCAAGAACCCAAGCCCTCCTCCTACCCGGCCTGTGAGCCGCAAGTGTGCCATCAACGCCCG
CAACGCCCTGACTGCACTGTTCACCTCTAGCCACCAGCCCAGCCCCCAGGACACAGTGAAAATGCCCAGC
AAGGTGAAGCCTGGATCCCCCGGACTCCCTCCTCCCCTTCGGCGCTCAACACGCCTCAAAACCTGA

Translation (791 aa):
MFNPQLQQQQQLQQQQQQLQQQLQQQQLQQQQQQILQLQQLLQQSPPQASLSIPVSRGLPQQSSPQQLLS
LQGLHSTSLLNGPMLQRALLLQQLQGLDQFAMPPATYDGASLTMPTATLGNLRAFNVTAPSLAAPSLTPP
QMVTPNLQQFFPQATRQSLLGPPPVGVPINPSQLNHSGRNTQKQARTPSSTTPNRKTVPLEDREDPTEGS
EEATELQMDTCEDQDSLVGPDSMLSEPQVPEPEPFETLEPPAKRCRSSEESTEKGPTGQPQARVQPQTQM
TAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVPTQAQSQEQTSEK
TQDQPQTWPQGSVPPPEQASGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEDRSREASAGGLDLGE
CEKRAGEMLGMWGAGSSLKVTILQSSNSRAFNTTPLTSGPRPGDSTSATPAIASTPSKQSLQFFCYICKA
SSSSQQEFQDHMSEAQHQQRLGEIQHSSQTCLLSLLPMPRDILEKEAEDPPPKRWCNTCQVYYVGDLIQH
RRTQEHKVAKQSLRPFCTICNRYFKTPRKFVEHVKSQGHKDKAQELKTLEKETGSPDEDHFITVDAVGCF
ESGQEEDEDDDEEEEEEGEIEAEEEFCKQVKPRETSSEQGKGSETYNPNTAYGEDFLVPVMGYVCQICHK
FYDSNSELRLSHCKSLAHFENLQKYKAKNPSPPPTRPVSRKCAINARNALTALFTSSHQPSPQDTVKMPS
KVKPGSPGLPPPLRRSTRLKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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