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Report for CCDS56988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56988.1 Public Mus musculus 15 Smpd5 23 108 98 CCDS HistoryNCBI Gene:100503915Re-query CCDS DB by CCDS ID:56988.1Re-query CCDS DB by GeneID:100503915See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56988.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163991.3 ENSMUSP00000134687.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163991.3Link to Ensembl Protein Viewer:ENSMUSP00000134687.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163991Re-query CCDS DB by Protein ID:ENSMUSP00000134687
Original member Current member NCBI NM_001195537.2 NP_001182466.1 Accepted alive Link to Nucleotide Sequence:NM_001195537.2Link to Protein Sequence:NP_001182466.1Re-query CCDS DB by Nucleotide ID:NM_001195537Re-query CCDS DB by Protein ID:NP_001182466Link to BLAST:NP_001182466.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182466.1 483 D6MZJ6 483 100% 0 0

Chromosomal Locations for CCDS 56988.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76294434 76295291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76295390 76295462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76295684 76295824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76295895 76295984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76296078 76296141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76296226 76296361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76296436 76296525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGAGTCTCCCTGACATTTCGCGGCGAAGGAGCCCAGTGCCCCAAGAGGACTGGCCCCTGACACCCAACG
CCCTGAGGCCTTCACCTTTCCCGAACCCAGTGCTGCAAGCCCTCTACAGTTTATCCCGCGTGCTGCTTTT
CCCGACTTACTGGTCCCTGGACCAGTTGCTGGGCTGCTGGGCACCAAGCGTCCGATCCAAAAGCTTGGGG
TGGTTCAAAGTCCTGGCAGGAAGTGGGGTGTTGCTACCACTGGTGGTGGTCGGCCTACCCTTAGCGTTGG
TCGGCCTTGCGCTCTGGCTGCCCCTCCAGGTCTGGCGCCGCCCCTTCTGCTATCAGCCCCCTCCGGCATG
CTGGGTGTGGCCACAGCCCTGGCATCCGCCTGCTGAGCGCCGGCGCTGCTTTGTCTTTCTCACTGCTAAT
CTGTGCCTATTGCCCCACGGGCTGGCTCATTTTAACAACCTGTCGCACAGCCTGCAGCGCGCCGAGGCTG
TAGGGGCCGCACTGCTAGATAGCCTTCAATCGTCACAGTATAGGGTTTCCGAATGCAGTCAGCCGCCGCC
TAGGGTGCCTGGTGGTGAGCTGAAGGCCACATTACCTATGGGCTTGGACTTCGTGTGTCTGCAGGAAGTG
TTCGACCTCCGCGCAGCTCGTCGTCTTGTGCGTGTCTTGGTACCAAATCTGGGCCCGGTGATATATGATG
TGGGCACATTTGGCTTAATGGCTGGGCCGTACATCAAGGTACTGGGCAGTGGGCTTCTACTGGCCTCGCG
CTACCCGTTGCTGCGTGCCACCTTCCGTTGCTTTCCTAACGCTCGTCGCGAGGACGCCATGGCCTCCAAA
GGTCTACTATCAGTCCAGGCGCAGCTAGGCATCGTGGACGGGCACCCCATCGTGGGATACCTTCATTGTA
CACATTTGCATGCACCCGTTGAGGATGGACATATTCGCTGCAAACAGCTAACGCTGCTGCTGGAATGGGT
GGAAGAGTTCGAGGCTGAGAACCGGCAGAGTGATGAGGCTGTAGCCTTCAGCGTCCTCCTGGGAGATCTA
AACTTTGACAACTGCTCCCAAGATCATGCCAAGGAGCAGGGCCATAAACTCTTCAGCTGCTTTCAGGACC
CCTGCCGGCTAGGCGTTTGCCAGGAACAGCCCTGGGCCTTAGGGACAATCTTGAATTCCTCCATGCTACG
CCACTCCATTGCCTGCTCCCCAGAGATGCTTCGGAGGGCCCTGAGACAGGAAAAGGGGCGCCGCCTGTAC
CTGTCAGGGCCCCTTCATGGGAGTTACCCAGCTCAGTCCTGGAAGGGCCGGCGTCTGGACTACATCACCT
ACCGCAGAGTACCCGGGAGTCGCCTGAGCCCAGAGGCGGAGCAGGTGACATTCAGTACTGCCTTTGCTGG
ACTCACGGACCACTTGGCTATGGGCCTGAAGCTTCAAGTGGTATGCTCCTGA

Translation (483 aa):
MSLPDISRRRSPVPQEDWPLTPNALRPSPFPNPVLQALYSLSRVLLFPTYWSLDQLLGCWAPSVRSKSLG
WFKVLAGSGVLLPLVVVGLPLALVGLALWLPLQVWRRPFCYQPPPACWVWPQPWHPPAERRRCFVFLTAN
LCLLPHGLAHFNNLSHSLQRAEAVGAALLDSLQSSQYRVSECSQPPPRVPGGELKATLPMGLDFVCLQEV
FDLRAARRLVRVLVPNLGPVIYDVGTFGLMAGPYIKVLGSGLLLASRYPLLRATFRCFPNARREDAMASK
GLLSVQAQLGIVDGHPIVGYLHCTHLHAPVEDGHIRCKQLTLLLEWVEEFEAENRQSDEAVAFSVLLGDL
NFDNCSQDHAKEQGHKLFSCFQDPCRLGVCQEQPWALGTILNSSMLRHSIACSPEMLRRALRQEKGRRLY
LSGPLHGSYPAQSWKGRRLDYITYRRVPGSRLSPEAEQVTFSTAFAGLTDHLAMGLKLQVVCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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