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Report for CCDS56894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56894.1 Public Mus musculus 13 Clptm1l 23 108 98 CCDS HistoryNCBI Gene:218335Re-query CCDS DB by CCDS ID:56894.1Re-query CCDS DB by GeneID:218335See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56894.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022102.8 ENSMUSP00000022102.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022102.8Link to Ensembl Protein Viewer:ENSMUSP00000022102.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022102Re-query CCDS DB by Protein ID:ENSMUSP00000022102
Original member Current member NCBI NM_146047.2 NP_666159.2 Accepted alive Link to Nucleotide Sequence:NM_146047.2Link to Protein Sequence:NP_666159.2Re-query CCDS DB by Nucleotide ID:NM_146047Re-query CCDS DB by Protein ID:NP_666159Link to BLAST:NP_666159.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666159.2 539 Q8BXA5 539 100% 0 0

Chromosomal Locations for CCDS 56894.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 73604238 73604399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73604930 73605030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73606222 73606411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73607720 73607868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73608904 73608982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73611144 73611261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73611622 73611716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73612394 73612478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73613658 73613761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73614607 73614672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73615173 73615223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73615963 73616045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73616815 73616849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73617578 73617633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73617719 73617763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73618402 73618517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73620033 73620117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGTGGAGCGGCCGCAGCTCTTTTACCAGCTTGGTGGTGGGCGTGTTCCTGGTGTACGTGGTGCATACCT
GCTGGGTCATGTACGGTATCGTCTATACCCGTCCGTGCTCGGGTGACTCCAACTGCATCCAGCCCTATCT
GGCCCTGCGGCCCAAACTGCAGCTGAGTGTTTACACCACCACACGGTCCAGCCTTGGTGCAGAGAACAAT
GTGGACCTGATCTTGAACGTGGAAGACTTTGATGTGGATTCCAAATTTGAAAGGACAGTTAATGTTTCTG
TACCAAAGAAAACAAGAAACAATGGGACGCTGTATGCATATATTTTCCTACATCATGCTGGGATTCTACC
CTGGCAAGATGGGAAACAGGTACATGTGGTCAGTACTCTGACTACCTACATGATCCCCAAACCAGAAGAA
ATTAACTTGCTCACTGGGGAGTCTGCTACACAGCAACAGATAGAAGCCGAGAAGAAGCCATCAAACGCCC
TGGATGAACCCGTCTCTCACTGGCGACCAAGGCTGACCCTGAATGTGATGGTGGATGACTTTGTCTTTGA
TGGTTCCTCCCTGCCTGCAGATGTGCATCGGTACATGAAGATGATTCAGCTTGGGAAGACAGTGCACTAC
CTCCCCATCCTGTTCATTGACCAGCTGAGCAACCGGGTGAAAGACCTGATGGTGATAAACCGATCTACCA
CCGAGCTGCCACTCACTGTGTCCTACGACAAGATCTCATTGGGGCGGCTGCGCTTCTGGATCCACATGCA
GGATGCCGTGTACTCCCTGCAGCAGTTCGGGTTTTCAGAAAAAGATGCAGATGAATTGAAGGGAATTTTC
GTAGACACCAACTTATATCTCTTAGCATTGACCTTCTTTGTTGCAGCCTTTCACCTTCTTTTTGATTTCC
TGGCATTTAAAAGTGACATCAGTTTCTGGAAGAAAAAGAAGAGCATGATTGGAATGTCTACCAAAGCAGT
GCTCTGGCGTTGCTTCAGCACTGTGGTCATCTTCCTCTTCCTGCTGGATGAACAGACAAGCCTGCTGGTG
CTGATCCCTGCAGGTGTTGGAGCTGCCATTGAGCTTTGGAAAGTGAAGAAGGCATTGAAAATTACAGTAG
CCTGGAGGGGCTTGAGACCTGTGTTTCAGTTTGGTACCCATAGTGAATCTGAGAGGAAGACTGAGAAGTA
TGATGCTCAGGCCATGAAGTACTTGTCTTATCTGCTCTACCCTCTCTGTGTCGGGGGCGCTGTCTACTCA
CTCCTAAATATCAAGTATAAGAGTTGGTACTCCTGGCTCATCAACAGCTTTGTGAATGGTGTCTATGCCT
TTGGCTTCCTCTTCATGTTGCCCCAGCTTTTTGTCAATTACAAGATGAAGTCAGTGGCACACCTGCCTTG
GAAGGCCTTTACCTACAAGGCTTTTAACACCTTCATTGATGATGTCTTTGCCTTCATCATCACCATGCCC
ACATCCCACCGGCTGGCCTGTTTCAGAGATGATGTGGTCTTCCTGGTCTACCTTTACCAGCGGTGGCTTT
ACCCTGTGGATAAGAGCAGGGTCAATGAATTTGGGGAGTCTTATGAGGAGCAGCCCAAGCGGAAGCCCCA
TCCAGACTGA

Translation (539 aa):
MWSGRSSFTSLVVGVFLVYVVHTCWVMYGIVYTRPCSGDSNCIQPYLALRPKLQLSVYTTTRSSLGAENN
VDLILNVEDFDVDSKFERTVNVSVPKKTRNNGTLYAYIFLHHAGILPWQDGKQVHVVSTLTTYMIPKPEE
INLLTGESATQQQIEAEKKPSNALDEPVSHWRPRLTLNVMVDDFVFDGSSLPADVHRYMKMIQLGKTVHY
LPILFIDQLSNRVKDLMVINRSTTELPLTVSYDKISLGRLRFWIHMQDAVYSLQQFGFSEKDADELKGIF
VDTNLYLLALTFFVAAFHLLFDFLAFKSDISFWKKKKSMIGMSTKAVLWRCFSTVVIFLFLLDEQTSLLV
LIPAGVGAAIELWKVKKALKITVAWRGLRPVFQFGTHSESERKTEKYDAQAMKYLSYLLYPLCVGGAVYS
LLNIKYKSWYSWLINSFVNGVYAFGFLFMLPQLFVNYKMKSVAHLPWKAFTYKAFNTFIDDVFAFIITMP
TSHRLACFRDDVVFLVYLYQRWLYPVDKSRVNEFGESYEEQPKRKPHPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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