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Report for CCDS56826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56826.1 Public Mus musculus 11 Aatk 23 108 98 CCDS HistoryNCBI Gene:11302Re-query CCDS DB by CCDS ID:56826.1Re-query CCDS DB by GeneID:11302See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56826.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064307.9 ENSMUSP00000067181.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064307.9Link to Ensembl Protein Viewer:ENSMUSP00000067181.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000064307Re-query CCDS DB by Protein ID:ENSMUSP00000067181
Original member Current member NCBI NM_001198785.1 NP_001185714.1 Accepted alive Link to Nucleotide Sequence:NM_001198785.1Link to Protein Sequence:NP_001185714.1Re-query CCDS DB by Nucleotide ID:NM_001198785Re-query CCDS DB by Protein ID:NP_001185714Link to BLAST:NP_001185714.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185714.1 1374 Q80YE4-3 1374 99.9272% 0 1

Chromosomal Locations for CCDS 56826.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120008404 120008444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120009275 120009475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120009607 120009754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120009834 120012426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120012723 120012872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120013448 120013569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120013650 120013734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120015459 120015592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120016106 120016193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120016313 120016431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120016728 120016807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120018745 120018892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120021402 120021535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120046869 120046950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4125 nt):
ATGCTCATCGCGCTGCTGGCCCTGGCCATGTCGTCGTCCTTCTTCAACCCCAGCTTTGCCTTCAGCTCCC
ACTTCGACCCGGACGGTGCCCCGCTCAGTGAGCTGTCCTGGTCCTCGTCCCTCGCGGTGGTAGCCGTGTC
CTTCTCTGGAATCTTCACTGTCGTCATCCTCATGCTGGCCTGCCTGTGTTGTAAGAAGGGCGGCATCGGG
TTCAAGGAGTTTGAGAATGCTGAAGGGGACGAGTATGTGGCCGACTTCTCGGAGCAGGGCTCCCCGGCTG
CAGCTGCACAGACCGGCCCCGATGTGTATGTCCTGCCCCTCACCGAGGTCTCCTTACCCATGGCCAAGCA
GCCGGGTCGCTCCGTGCAACTTCTCAAGTCCACGGACCTGGGCCGGCACAGCCTCCTGTACTTAAAGGAG
ATTGGCCACGGCTGGTTTGGGAAGGTGTTTTTGGGGGAGGTACACTCGGGCGTCAGTGGCACGCAGGTGG
TGGTGAAGGAGCTGAAGGTGAGCGCCAGCGTGCAGGAGCAGATGCAGTTCCTGGAGGAGGCGCAGCCCTA
CAGGGCCCTGCAGCACAGCAACCTGCTCCAGTGCCTGGCCCAGTGTGCTGAAGTGACCCCCTACCTGCTG
GTTATGGAGTTCTGTCCACTGGGGGACCTCAAAGGTTATCTACGGAGCTGCCGGGTGACAGAGTCCATGG
CGCCTGACCCACTTACCTTGCAGCGCATGGCGTGCGAGGTGGCGTGTGGCGTCTTGCATCTACATCGACA
CAACTATGTACACAGTGACCTGGCCCTGAGGAACTGCCTGCTTACGGCTGACCTGACAGTGAAGGTTGGT
GATTATGGCCTGTCGCATTGCAAATACAGGGAAGACTATCTCGTGACCGCTGACCAGCTGTGGGTGCCGC
TGCGCTGGATCGCGCCAGAGCTGGTGGACGAGGTTCACGGCAACCTGCTGGTGGTGGACCAGACCAAGAG
CAGCAACGTGTGGTCCCTGGGTGTGACCATCTGGGAGCTTTTCGAGTTGGGTGCGCAGCCGTACCCCCAG
CACTCGGACGGGCAGGTGCTGGCTTACGCCGTCCGGGAGCAGCAGCTTAAGTTGCCCAAGCCCCAGCTGC
AGCTGGCTCTATCTGATCGATGGTACGAGGTGATGCAGTTCTGCTGGCTGCAGCCAGAGCAGAGGCCCAC
AGCTGAAGAGGTTCATCTACTGCTGTCCTACTTGTGTGCTAAGGGCACCACAGAATTGGAGGAGGAGTTT
GAGCGGCGCTGGCGCTCCCTGCGGCCCGGGGGCAGCACGGGCCTGGGCTCGGGTTCTGCAGCCCCAGCAG
CTGCCACCGCCGCCTCCGCGGAGCTCACCGCTGCCTCGTCTTTCCCGCTGCTGGAGCGGTTCACCAGCGA
CGGCTTTCACGTGGACAGTGATGACGTGCTGACGGTCACGGAGACAAGCCACGGCCTCAACTTTGAATAC
AAGTGGGAGGCTGGCTGTGGCGCTGAGGAGTACCCACCCTCGGGGGCTGCATCAAGCCCAGGCTCGGCAG
CGCGCCTGCAGGAGTTGTGCGCGCCTGACAGTTCACCGCCGGGTGTGGTGCCAGTCCTCAGTGCCCACAG
CCCCTCAGTGGGTAGCGAGTACTTCATCCGCCTGGAGGGGGCAGTGCCTGCTGCTGGCCACGATCCAGAC
TGTGCCGGCTGCGCTCCCAGCCCCCAGGCTGTGACTGACCAGGACAATAACTCTGAGGAGAGCACTGTTG
CGTCCCTTGCCATGGAGCCATTGCTGGGCCATGCACCCCCAACTGAGGGTCTGTGGGGCCCCTGTGACCA
CCATTCACATAGGAGGCAAGGGTCACCCTGTCCCTCACGCTCACCCTCTCCTGGGACCCCGATGTTGCCA
GCTGAAGACATAGACTGGGGTGTGGCTACCTTCTGCCCGCCCTTCTTTGATGACCCACTGGGTGCATCTC
CCTCGGGGAGTCCTGGGGCCCAGCCCTCCCCCAGTGATGAGGAGCCAGAGGAGGGGAAGGTGGGGTTGGC
CGCTCAGTGTGGACACTGGAGCTCTAACATGTCAGCTAACAACAACAGTGCCAGTCGCGACCCAGAATCC
TGGGATCCTGGCTATGTTAGCAGCTTCACAGACAGCTACAGGGACGACTGCTCCAGCTTAGAGCAGACCC
CTCGAGCCTCCCCTGAGGTGGGCCATCTCCTGTCCCAGGAGGATCCCAGAGATTTTCTCCCTGGGCTAGT
AGCAGTCTCCCCTGGTCAGGAGCCAAGCCGTCCCTTCAACCTGCTCCCCCTGTGTCCTGCCAAAGGCCTG
GCACCTGCTGCCTGCCTCATCACATCCCCTTGGACAGAGGGAGCTGTGGGTGGGGCTGAGAACCCCATTG
TGGAACCCAAACTTGCCCAGGAGGCTGAGGGATCTGCTGAACCCCAGCTACCCCTTCCTTCCGTCCCCTC
CCCATCCTGTGAAGGAGCCTCACTTCCCTCGGAGGAGGCAAGCGCTCCTGACATCCTACCTGCCTCACCC
ACACCCGCTGCTGGCAGCTGGGTGACCGTCCCTGAGCCAGCCCCCACCCTGGAGAGCAGCGGCAGTTCTC
TGGGGCAAGAGGCACCCAGCAGCGAGGACGAAGACACGACCGAGGCAACATCAGGAGTCTTCACCGACCT
GTCCAGTGACGGCCCACACACGGAGAAGTCAGGCATAGTACCAGCCTTGCGCAGTCTGCAGAAGCAGGTG
GGGACCCCTGACTCCCTGGACTCTCTGGACATACCGTCCTCAGCCAGTGATGGTGGCTGTGAGGTCTTAA
GCCCATCAGCTGCTGGTCCACCTGGCGGGCAGCCCCGTGCCGTGGACAGTGGCTATGATACAGAGAACTA
TGAGTCTCCTGAGTTTGTGCTCAAGGAGGCCCATGAGTCGAGTGAGCCTGAGGCCTTTGGGGAGCCAGCC
TCAGAGGGTGAGAGCCCAGGGCCCGATCCTCTGCTCTCTGTCTCCCTTGGTGGCCTCAGCAAGAAGAGCC
CCTACCGAGACTCTGCCTACTTTTCAGACCTGGATGCCGAGTCCGAACCCACCTTTGGCCCTGAGAAGCA
CAGTGGGATCCAGGACTCCCAAAAGGAGCAAGACCTGAGGAGCCCACCTAGCCCAGGGCATCAGTCTGTG
CAGGCTTTTCCCAGGTCTGCAGTGTCCAGCGAGGTGCTGTCCCCTCCACAGCAGTCAGAGGAGCCCTTGC
CAGAAGTCCCCAGGCCAGAGCCTCTCGGGGCTCAAGGCCCAGTTGGAGTGCAGCCTGTGCCCGGCCCAAG
TCATTCCAAATGTTTCCCGCTGACCTCCGTTCCACTGATCTCAGAAGGCAGTGGCACGGAGCCCCAGGGT
CCCTCAGGACAGCTGTCAGGGCGAGCCCAGCAGGGGCAGATGGGCAATCCTAGCACACCCAGATCCCCGC
TCTGCCTGGCCCTGCCTGGCCACCCCGGGGCTTTGGAGGGCCGGCCGGAGGAGGATGAGGACACCGAGGA
CAGCGAGGAGTCTGATGAGGAGCTCCGGTGCTACAGCGTCCAGGAGCCCAGTGAGGACAGCGAGGAGGAG
CCGCCAGCGGTGCCCGTGGTGGTGGCTGAGAGCCAGAGTGCCCGAAATCTACGCAGCCTGCTGAAGATGC
CCAGCCTGCTGTCAGAGGCCTTCTGTGACGACCTGGAGCGCAAGAAGAAGGCTGTGTCCTTCTTCGATGA
TGTCACGGTCTACCTCTTTGACCAGGAAAGCCCCACCCGAGAGACTGGGGAGCCCTTTCCCAGCACAAAG
GAATCACTCCCTACGTTCCTGGAGGGTGGCCCCAGCTCACCCAGTGCCACCGGCCTGCCACTGCGGGCTG
GCCACTCTCCTGACAGCTCTGCTCCTGAACCAGGCAGTAGGTTCGAATGGGATGGTGATTTCCCGTTGGT
GCCCGGCAAGGCTGCTTTGGTGACTGAGCTGGATCCTGCTGACCCTGTCCTGGCGGCGCCTCCCACGCCA
GCTGCGCCCTTCTCACGCTTCACCGTGTCACCCACACCTGCCTCCCGCTTTTCCATCACCCACATATCTG
ACTCAGATGCCCAGTCCGTGGGAGGCCCAGCAGCAGGTGCTGGGGGCCGATACACAGAGGCTTGA

Translation (1374 aa):
MLIALLALAMSSSFFNPSFAFSSHFDPDGAPLSELSWSSSLAVVAVSFSGIFTVVILMLACLCCKKGGIG
FKEFENAEGDEYVADFSEQGSPAAAAQTGPDVYVLPLTEVSLPMAKQPGRSVQLLKSTDLGRHSLLYLKE
IGHGWFGKVFLGEVHSGVSGTQVVVKELKVSASVQEQMQFLEEAQPYRALQHSNLLQCLAQCAEVTPYLL
VMEFCPLGDLKGYLRSCRVTESMAPDPLTLQRMACEVACGVLHLHRHNYVHSDLALRNCLLTADLTVKVG
DYGLSHCKYREDYLVTADQLWVPLRWIAPELVDEVHGNLLVVDQTKSSNVWSLGVTIWELFELGAQPYPQ
HSDGQVLAYAVREQQLKLPKPQLQLALSDRWYEVMQFCWLQPEQRPTAEEVHLLLSYLCAKGTTELEEEF
ERRWRSLRPGGSTGLGSGSAAPAAATAASAELTAASSFPLLERFTSDGFHVDSDDVLTVTETSHGLNFEY
KWEAGCGAEEYPPSGAASSPGSAARLQELCAPDSSPPGVVPVLSAHSPSVGSEYFIRLEGAVPAAGHDPD
CAGCAPSPQAVTDQDNNSEESTVASLAMEPLLGHAPPTEGLWGPCDHHSHRRQGSPCPSRSPSPGTPMLP
AEDIDWGVATFCPPFFDDPLGASPSGSPGAQPSPSDEEPEEGKVGLAAQCGHWSSNMSANNNSASRDPES
WDPGYVSSFTDSYRDDCSSLEQTPRASPEVGHLLSQEDPRDFLPGLVAVSPGQEPSRPFNLLPLCPAKGL
APAACLITSPWTEGAVGGAENPIVEPKLAQEAEGSAEPQLPLPSVPSPSCEGASLPSEEASAPDILPASP
TPAAGSWVTVPEPAPTLESSGSSLGQEAPSSEDEDTTEATSGVFTDLSSDGPHTEKSGIVPALRSLQKQV
GTPDSLDSLDIPSSASDGGCEVLSPSAAGPPGGQPRAVDSGYDTENYESPEFVLKEAHESSEPEAFGEPA
SEGESPGPDPLLSVSLGGLSKKSPYRDSAYFSDLDAESEPTFGPEKHSGIQDSQKEQDLRSPPSPGHQSV
QAFPRSAVSSEVLSPPQQSEEPLPEVPRPEPLGAQGPVGVQPVPGPSHSKCFPLTSVPLISEGSGTEPQG
PSGQLSGRAQQGQMGNPSTPRSPLCLALPGHPGALEGRPEEDEDTEDSEESDEELRCYSVQEPSEDSEEE
PPAVPVVVAESQSARNLRSLLKMPSLLSEAFCDDLERKKKAVSFFDDVTVYLFDQESPTRETGEPFPSTK
ESLPTFLEGGPSSPSATGLPLRAGHSPDSSAPEPGSRFEWDGDFPLVPGKAALVTELDPADPVLAAPPTP
AAPFSRFTVSPTPASRFSITHISDSDAQSVGGPAAGAGGRYTEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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