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Report for CCDS56792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56792.1 Public Mus musculus 11 Rpain 23 108 98 CCDS HistoryNCBI Gene:69723Re-query CCDS DB by CCDS ID:56792.1Re-query CCDS DB by GeneID:69723See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56792.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169965.7 ENSMUSP00000128903.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169965.7Link to Ensembl Protein Viewer:ENSMUSP00000128903.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169965Re-query CCDS DB by Protein ID:ENSMUSP00000128903
Original member Current member NCBI NM_001252414.2 NP_001239343.1 Accepted alive Link to Nucleotide Sequence:NM_001252414.2Link to Protein Sequence:NP_001239343.1Re-query CCDS DB by Nucleotide ID:NM_001252414Re-query CCDS DB by Protein ID:NP_001239343Link to BLAST:NP_001239343.1

Chromosomal Locations for CCDS 56792.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70970507 70970587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70971764 70971934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70973015 70973075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70977658 70977665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGGCAGAGTCCTCGGGGTCTCCGCACCGCTTGTTGTACAAGCAGGTGGGCTCGCCCCACTGGAAAGAAA
CTTTCAGGCAGGGATGTCTGGAGAGAATGAGAAACAGCAGGCACAGGCTCCTGAACAAATATCGCCAGGC
TGCAGGTAGCACGCCGGGGACAGCCTCAGACAGACTTCTTGTGCAAGAAGTAATGGAGGAAGAGTGGGCT
TCTTTGCAGTCTGTGGAGAATTGTCCGGAGGCCTTGCTTCAGTTGGAATTGCCACTGGACCTAGCTGTGC
TGCAGGACATCGAGCAGGAGCTGTGTAATGAAGACTTGTGA

Translation (106 aa):
MAESSGSPHRLLYKQVGSPHWKETFRQGCLERMRNSRHRLLNKYRQAAGSTPGTASDRLLVQEVMEEEWA
SLQSVENCPEALLQLELPLDLAVLQDIEQELCNEDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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