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Report for CCDS56690.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56690.1 Public Mus musculus 10 Cnksr3 23 108 98 CCDS HistoryNCBI Gene:215748Re-query CCDS DB by CCDS ID:56690.1Re-query CCDS DB by GeneID:215748See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 56690.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015346.11 ENSMUSP00000015346.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015346.11Link to Ensembl Protein Viewer:ENSMUSP00000015346.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000015346Re-query CCDS DB by Protein ID:ENSMUSP00000015346
Original member Current member NCBI NM_172546.2 NP_766134.1 Accepted alive Link to Nucleotide Sequence:NM_172546.2Link to Protein Sequence:NP_766134.1Re-query CCDS DB by Nucleotide ID:NM_172546Re-query CCDS DB by Protein ID:NP_766134Link to BLAST:NP_766134.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766134.1 555 Q8BMA3-1 555 100% 0 0

Chromosomal Locations for CCDS 56690.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 7120288 7120586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7126095 7126184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7126635 7126843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7129023 7129147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7134522 7134668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7135048 7135116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7138355 7138414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7140319 7140438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7142961 7143002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7152864 7152951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7154283 7154485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7160644 7160807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7211632 7211683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGAGCCCGTGACCAAGTGGAGCCCCAAACAAGTGGTGGACTGGACTAGAGGGTTGGATGACTGCCTGC
AGCCATATGTGCACAAGTTTGAGCGGGAGAAGATAGACGGGGAGCAGTTGCTGAAAATCTCCCACCAGGA
TCTCGAGGAACTGGGGGTCACACGGATCGGCCACCAAGAGCTGGTGTTGGAGGCTGTGGATCTTCTCTGT
GCACTGAATTATGGCCTTGAAACTGATACTATGAAGAACTTGGTTCTGAAACTGCGGGCATCTTCCCACA
ACTTGCAGAATTACATCAGTAGCCGCCGGAAGAGTCCAGCCTACGATGGGAATACGTCCCGTAAGCCCCC
CAACGAGTTCCTGACTTCTGTGGTGGAACTCATTGGTGCTGCCAAGGCCCTGCTGGCTTGGCTGGACCGG
GCTCCATTCACAGGGATCACAGATCTCTCTGTGACAAAGAACAAAATCATCCAACTGTGCCTGGACCTGA
CCACAGCAGTCCAGAAGGATTGCCTCATAGCAGAAATGGAGGATAAAGTTTTAAATGTGGTCAAGGTTTT
AAATGGCATCTGTGACAAAACAATGCGCTCTACTACAGACCCTGTTATGAGCCAGTGTGCCTGCCTGGAG
GAAGTTCACTTACCAAATGTTAGACCCGGGGAAGGCCTGGGCATGTACATCAAGTCAACCTACGACGGAC
TGCATGTGATTACTGGAACCACAGAAAATTCTCCTGCAGACAGATCTCAAAAGATTCACGCTGGCGATGA
GGTCATTCAAGTCAATCGGCAGACAGTGGTTGGGTGGCAGTTGAAAAATCTGGTGAGAAAGTTGAGAGAG
AACCCCACGGGCGTGGTGCTGCTGCTGAAGAAGAGGCCCACGGGCTCCTTCAGCTTCACTCCGGCCCCAC
TGAAGAACCTGCGGTGGAAGCCACCGCTCGTGCAGACCTCACCCCCGCCCACCACCACCCAGTCCCCAGA
GAGTACCATGGATGCCTCCCTGAAGAAGGAGAAGCCAGCCATCCTGGATCTATACATCCCTCCCCCACCT
GCTGTCCCCTACTCTCCCCGGGATGAGAATGTGAGTTTCGGCTACAGAGGACACAGTAAGAGTAAGCAGC
CGTTGCCTGTGCGCAAGGGTTCCGAGTCCCCTAACTCCTTCCTGGACCAGGAGAGCCAAAGACGCAGATT
TACCATTGCAGATTCCGATCAGCTGCCCGGGTATTCGGTGGAAACCAATGTTCTGCCCACAAAAATGAGA
GGGAAGACACCATCCTACGGCAAACCCCGGCCTCTGTCCATGCCTGCCGATGGGAACTGGATGGGGATCG
TGGACCCTTTTGCTAAACCTCGAGGAAATGGGAGGAAAGGGGAAGATGCCCTCTGCCGGTACTTCAGCAA
TGAGCGGATCACACCCATCACTGAAGAAAGTGCCTCTCCTATGTACCGGTTCTCTAGACCCCTGACTGAG
CGGCACCTGGTCCGAGGTGCGGACTACATCCGAGGGAGCAGGTGCTACATCAACTCCGACCTACACAGCA
GTGCCACCATTCCATTCCAGGAGGAAGGTTCCAAGAAGAAATCAGCCTCCTCATCGGCCAAGGCGTCCTC
TGGGGAGCCGTCGCTGCTGGTCAGCTGGCTGACTCGCCTCAAGCTGTTGACTCACTGA

Translation (555 aa):
MEPVTKWSPKQVVDWTRGLDDCLQPYVHKFEREKIDGEQLLKISHQDLEELGVTRIGHQELVLEAVDLLC
ALNYGLETDTMKNLVLKLRASSHNLQNYISSRRKSPAYDGNTSRKPPNEFLTSVVELIGAAKALLAWLDR
APFTGITDLSVTKNKIIQLCLDLTTAVQKDCLIAEMEDKVLNVVKVLNGICDKTMRSTTDPVMSQCACLE
EVHLPNVRPGEGLGMYIKSTYDGLHVITGTTENSPADRSQKIHAGDEVIQVNRQTVVGWQLKNLVRKLRE
NPTGVVLLLKKRPTGSFSFTPAPLKNLRWKPPLVQTSPPPTTTQSPESTMDASLKKEKPAILDLYIPPPP
AVPYSPRDENVSFGYRGHSKSKQPLPVRKGSESPNSFLDQESQRRRFTIADSDQLPGYSVETNVLPTKMR
GKTPSYGKPRPLSMPADGNWMGIVDPFAKPRGNGRKGEDALCRYFSNERITPITEESASPMYRFSRPLTE
RHLVRGADYIRGSRCYINSDLHSSATIPFQEEGSKKKSASSSAKASSGEPSLLVSWLTRLKLLTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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