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Report for CCDS56668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56668.1 Public Mus musculus 10 H60c 23 108 98 CCDS HistoryNCBI Gene:670558Re-query CCDS DB by CCDS ID:56668.1Re-query CCDS DB by GeneID:670558See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 56668.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170893.2 ENSMUSP00000126536.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170893.2Link to Ensembl Protein Viewer:ENSMUSP00000126536.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000170893Re-query CCDS DB by Protein ID:ENSMUSP00000126536
Original member Current member NCBI NM_001204916.2 NP_001191845.1 Accepted alive Link to Nucleotide Sequence:NM_001204916.2Link to Protein Sequence:NP_001191845.1Re-query CCDS DB by Nucleotide ID:NM_001204916Re-query CCDS DB by Protein ID:NP_001191845Link to BLAST:NP_001191845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191845.1 197 B1B213 197 100% 0 0

Chromosomal Locations for CCDS 56668.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 3259306 3259409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3259709 3259972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3260235 3260420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 3267241 3267280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGGCTCTACTTCTCTTGATCCTGGAGTCCTGTAGTGCAGGCACATATGCCCTAAATTGCAAACTCACTG
TCAAGTATCGTACTCTACAAGGACTGTGCTCAGTGAATGGAAAGACTTTCCTTGATTTTGGTGATGAAAA
CCATGAGGGAAATGCCACTATGCTGTGTCCTGCTTTATACCAAAGCCTGACAGATATTTCAGAAGTAATG
TGGAGCCTGCAATCAGGTAATGATGCCTTGAATGTCACAACAAGATCTCAGTATTATCAAGGAGAATTCA
TTGATGGATTCTGGGACATCAACACTGATGAACAGCATAGCATCTACGTTTATCCACTTAATAAGACCTG
GAGAGAAAGTCATTCTGATAACAGCAGTGCCATGGAGCAGTGGAAGAACAAGAACCTAGAAAAAGATATC
AGGAATGTCCTCATGGTAGATTTCAGTTGCTGCCTCAACAAATCGTCGCCACACTTTAGAGAAATGCCAA
CCTTGCCAACCACTGCTGCACATGTGGACCAGCCTCGATCCATGGCATGCAAGTCCAGCCCCTTTGATGG
GTTGATAATGATATTGCTCATCTACATCCTCTAG

Translation (197 aa):
MALLLLILESCSAGTYALNCKLTVKYRTLQGLCSVNGKTFLDFGDENHEGNATMLCPALYQSLTDISEVM
WSLQSGNDALNVTTRSQYYQGEFIDGFWDINTDEQHSIYVYPLNKTWRESHSDNSSAMEQWKNKNLEKDI
RNVLMVDFSCCLNKSSPHFREMPTLPTTAAHVDQPRSMACKSSPFDGLIMILLIYIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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