NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS56662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56662.1 Public Mus musculus 1 Brox 23 108 98 CCDS HistoryNCBI Gene:71678Re-query CCDS DB by CCDS ID:56662.1Re-query CCDS DB by GeneID:71678See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56662.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057062.11 ENSMUSP00000061345.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057062.11Link to Ensembl Protein Viewer:ENSMUSP00000061345.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000057062Re-query CCDS DB by Protein ID:ENSMUSP00000061345
Original member Current member EBI ENSMUST00000163528.7 ENSMUSP00000132333.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163528.7Link to Ensembl Protein Viewer:ENSMUSP00000132333.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000163528Re-query CCDS DB by Protein ID:ENSMUSP00000132333
Original member Current member NCBI NM_001357242.2 NP_001344171.1 Accepted alive Link to Nucleotide Sequence:NM_001357242.2Link to Protein Sequence:NP_001344171.1Re-query CCDS DB by Nucleotide ID:NM_001357242Re-query CCDS DB by Protein ID:NP_001344171Link to BLAST:NP_001344171.1
Original member Current member NCBI NM_027861.4 NP_082137.1 Accepted alive Link to Nucleotide Sequence:NM_027861.4Link to Protein Sequence:NP_082137.1Re-query CCDS DB by Nucleotide ID:NM_027861Re-query CCDS DB by Protein ID:NP_082137Link to BLAST:NP_082137.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344171.1 411 Q8K2Q7-1 411 100% 0 0
NP_082137.1 411 Q8K2Q7-1 411 100% 0 0

Chromosomal Locations for CCDS 56662.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 183278352 183278438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183279470 183279629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183280800 183280950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183281215 183281296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183282486 183282571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183284133 183284222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183285037 183285142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183286126 183286198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183287741 183287836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183291907 183292003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183292475 183292581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183294334 183294434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGACCCATTGGTTTCATAGGAACCCATTAAAAGCTACAGCTCCCGTGTCTTTTAACTACTATGGCATGA
TCACTGGTCCTCCCGCTTCAAAGATTTGCAATGACTTGAGGTCCGCCAGGACTCGGCTCCTCGAGTTGTT
CACTGATTTGAGCTGTAATCCAGAAACAATGAAGAATGCGGCAGACTTGTATTTCTCTCTTTTACAAGGT
TTCATAAATTCAGTGGGTGACTCTACACAGGAAAGCAAATTACGATACATTCAGAATTTCAAGTGGACCG
ATACATTGCAAGGACACGTTCCGAGTGCCCAGCAGGATGCTGTTTTTGAACTGATTTCCATGGGATTTAA
TGTAGCGCTGTGGTACACAAAATATGCTTCAAGATTGGCTGGAAAAGAAAACATAACAGAAGATGAAGCA
AAAGAAGTTCACCGAAGCCTAAAAATTGCAGCTGGGATTTTTAAACATTTAAAGGAAAGTCATATCCCCA
AACTTCTTACACCAGCAGAAAAGGGGCGGGACTTGGAGGCTCGGCTCATCGATGCTTACATCATCCAGTG
CCAGGCCGAGGCTCAGGAAGTGACAATCGCCCGAGCCATTGAGCTGAAGCACGCTCCGGGACTGATCGCT
GCACTCGCCTATGACACAGCCAGCTTCTACCAGAAAGCAGATCATACTTTGTCCAGTTTGGAGCCTGCAC
ACTCTGCTAAATGGAGAAAGTACCTTCACTTGAAGATGTGCTTCTACACAGCGTATGCGTATTGCTACCA
TGGCCAGACTCTGTTGGCGAGCGATAAGTGTGGAGAAGCCATCCGATCTCTCCAAGAAGCAGAAAAATTG
TACGCAGAGGCAGAAGCCCTATGCAAAGAGTACGGGGAAACCAAAGGACCAGGGCCGACGGCCAAGCCGT
CAGGACACTTGTTCTTCCGGAAGCTTGGGAGCCTTGTGAAGAACACCCTGGACAAATGTCAGAGAGAAAA
TGGCTTCATTTACTTTCAAAAAATTCCAACAGAAGCCCCACAACTGGAACTCAAAGCAAATTATGGGCTG
GTAGAGCCTGTGCCTTTTGAATTCCCTCCTATGAGTGCTCACTGGACACCGGAAGCGTTGGCTGCGTTTG
ATCTCACCAAGAGACCCAAGGATGACAGTGTCAAACCCAAACCGGAAGAGGACGTGAAACCTGTAAAGGA
ACCAGATATCAGACCTCAGAAGGACACTGGGTGCTCGGTCTCATAA

Translation (411 aa):
MTHWFHRNPLKATAPVSFNYYGMITGPPASKICNDLRSARTRLLELFTDLSCNPETMKNAADLYFSLLQG
FINSVGDSTQESKLRYIQNFKWTDTLQGHVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEA
KEVHRSLKIAAGIFKHLKESHIPKLLTPAEKGRDLEARLIDAYIIQCQAEAQEVTIARAIELKHAPGLIA
ALAYDTASFYQKADHTLSSLEPAHSAKWRKYLHLKMCFYTAYAYCYHGQTLLASDKCGEAIRSLQEAEKL
YAEAEALCKEYGETKGPGPTAKPSGHLFFRKLGSLVKNTLDKCQRENGFIYFQKIPTEAPQLELKANYGL
VEPVPFEFPPMSAHWTPEALAAFDLTKRPKDDSVKPKPEEDVKPVKEPDIRPQKDTGCSVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH