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Report for CCDS56648.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56648.1 Public Mus musculus 1 Astn1 23 108 98 CCDS HistoryNCBI Gene:11899Re-query CCDS DB by CCDS ID:56648.1Re-query CCDS DB by GeneID:11899See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56648.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000193042.5 ENSMUSP00000142322.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193042.5Link to Ensembl Protein Viewer:ENSMUSP00000142322.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193042Re-query CCDS DB by Protein ID:ENSMUSP00000142322
Original member NCBI NM_001205204.1 NP_001192133.1 Updated not alive Link to Nucleotide Sequence:NM_001205204.1Link to Protein Sequence:NP_001192133.1Re-query CCDS DB by Nucleotide ID:NM_001205204Re-query CCDS DB by Protein ID:NP_001192133
Current member NCBI NM_001205204.2 NP_001192133.1 Accepted alive Link to Nucleotide Sequence:NM_001205204.2Link to Protein Sequence:NP_001192133.1Re-query CCDS DB by Nucleotide ID:NM_001205204Re-query CCDS DB by Protein ID:NP_001192133Link to BLAST:NP_001192133.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192133.1 1302 Q61137-1 1302 100% 0 0

Chromosomal Locations for CCDS 56648.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 158362583 158362865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158472375 158472562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158502048 158502441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158504203 158504349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158505362 158505469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158509846 158509995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158510955 158511146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158520444 158520528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158572952 158573026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158579581 158579718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158580211 158580361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158597157 158597323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158600315 158600509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158601937 158602064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158609251 158609355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158612346 158612534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158657040 158657308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158663995 158664128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158667482 158667633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158668628 158668763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158674580 158674680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158684077 158684260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158688513 158688750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3909 nt):
ATGGCTTTAGCCGGGCTCTGCGCCCTGTTCGCCTGCTGCTGGGGGCCGGCTGCGGTGCTGGCCACAGCTG
CCGGCGACGTGGATCCATCCAAGGAGCTGGAGTGCAAGCTCAAGAGCATCACTGTGTCGGCACTGCCCTT
CCTGCGCGAGAACGACCTGAGCATCATGCACAGTCCCTCGGCCTCCGAACCCAAGCTTCTCTTCTCCGTG
CGCAATGACTTCCCGGGAGAAATGGTCGTGGTGGACGACCTAGAGAACACGGAGCTACCCTATTTCGTGC
TGGAGATCTCAGGGAATACAGAAGACATCCCCCTGGTGCGCTGGAGGCAGCAATGGCTGGAGAATGGCAC
TTTACTCTTTCATATTCACCACCAAGATGGTGCTCCAAGTCTCCCTGGACAAGACCCAACTGAAGAACCC
CAACATGAATCAGCAGAGGAAGAGCTGAGGATCCTGCACATCTCAGTCATGGGTGGCATGATCGCTCTGT
TGCTATCCATCTTGTGCCTGGTGATGATCCTGTACACTCGCAGGCGCTGGTGCAAACGTCGCCGGGTTCC
CCAGCCCCAGAAGAGTGCCAGTGCAGAGGCAGCAAATGAGATTCACTACATCCCATCTGTGCTGATTGGA
GGCCATGGGCGGGAAAGCTTGCGCAATGCCCGTGTGCAGGGCCACAACTCCAGTGGCACTCTGAGCATTC
GGGAGACACCCATCCTGGATGGCTATGAGTATGACATCACAGACCTGCGTCACCACCTGCAAAGGGAGTG
TATGAATGGAGGGGAGGACTTTGCCAGTCAGGTCACACGCACTTTGGACTCCCTACAGGGATGCAATGAG
AAGTCTGGGATGGATCTAACACCAGGGAGTGACAATGCCAAGCTTTCCCTGATGAACAAGTATAAAGACA
ATATCATAGCCACAAGCCCCGTGGATTCTAACCACCAGCAAGCCACTCTGCTCTCCCACACCTCCAGCAG
CCAGAGAAAGAGGATCAACAATAAAGCCAGAGCTGGTTCTGCCTTCTTGAACCCTGAAGGGGACTCCAGC
ACAGAGGCCGAAAATGACCCACAGCTGACCTTCTACACAGACCCCTCTCGGAGCCGGAGGCGCAGTCGAG
TGGGCTCTCCCCGAAGTCCTGTGAATAAGACCACCTTGACCCTGATCAGTGTCACCAGCTGCGTGATTGG
CCTCGTGTGCTCTTCTCATGTCAGCTGCCCTCTTGTTGTCAAGATCACCCTACACGTCCCTGAGCACTTG
ATCGCTGATGGGAGCCGCTTCATCCTGCTGGAGGGGAGCCAGCTGGATGCCAGTGACTGGCTGAACCCTG
CCCAAGTGGTTCTCTTCTCTCAGCAGAACTCCAGCGGGCCCTGGGCCATGGACCTCTGTGCCCGGCGGCT
CCTGGACCCTTGTGAACACCAATGTGACCCCGAAACTGGTAGGCGGGAGCACCGGGCAGCGGGGGAATGC
CTGTGCTATGAAGGCTACATGAAGGATCCTGTCCACAAGCACCTTTGCATTCGGAATGAATGGGGGACCA
ACCAGGGGCCTTGGCCTTACACGATATTTCAGCGAGGCTTTGACCTGGTTTTGGGAGAGCAACCCTCTGA
TAAGATATTCAGATTCACCTATACCCTCGGGGAAGGCATGTGGTTACCCCTCAGTAAGAGCTTTGTGATT
CCACCAGCCGAACTAGCCATCAATCCATCAGCAAAGTGTAAGACGGATATGACTGTGATGGAAGATGCTG
TAGAGGTCAGAGAGGAGCTGATGACATCATCATCCTTTGACAGCCTGGAGGTCCTATTAGACTCCTTTGG
GCCAGTGCGTGATTGCAGCAAAGATAACGGAGGCTGCAGTAAGAATTTTCGCTGCATTTCAGATCGCAAG
TTGGACTCTACTGGTTGTGTGTGTCCTTCAGGACTCAGCCCTATGAAGGACAGCTCAGGCTGCTATGATC
GCCATATCGGAGTGGACTGCTCAGATGGTTTCAACGGCGGCTGCGAACAGCTGTGTCTCCAGCAGATGGC
GCCGTTCCCAGAGGACCCCACCTTGTACAACATCCTTATGTTCTGCGGGTGTATCGAAGACTACAAGCTT
GGTGTGGATGGACGCTCTTGCCAACTTGTCACTGAGACCTGCCCAGAGGGAGGTGACTGTGGGGAAAGCA
GAGAGGTTCCCATGAACCAGACTCTCTTTGGAGAAATGTTCTTTGGCTACAACAACCAGTCCAAGGAAGT
AGCCACTGGACAGGTGCTAAAAGGAACATTCAGACAGAACAACTTTGCTCGTGGTTTAGACCAGCAACTG
CCGGATGGTCTTGTGGTTGCCTCTGTCCCACTGGAGAATCAGTGCCTAGAGGAAATCTCAGAGCCCACCC
CAGACCCTGACTTCTTGACTGGGATGGTGAACTTCAGTGAAGTGTCTGGATACCCGGTGCTGCAGCACTG
GAAGGTTCGGTCTGTGATGTACCACATCAAACTCAACCAAGCAGCCATCTCGCAGGCCTTCAGCAATGCT
CTTCACTCCTTGGATGGGGCTACATCTCGTGCAGATTTTGTGGCTTTGTTGGATCAGTTTGGAAACCATT
ACATCCAGGAAGCTGTCTACGGCTTTGAGGAATCCTGTTCTATATGGTACCCAAACAAGCAAGTCCAGCG
GAGACTCTGGCTGGAATATGAAGACATCAGTAAAGGCAACTCTCCATCTGATGAGTCGGAGGAGCGGGAA
AGGGATCCCAAGGTGCTGACATTCCCAGAATACATCGCTAGCCTGTCAGACTCTGGCACCAAGCGAATGG
CAGCTGGAGTCCGGATGGAGTGCCAGAGCAAGGGACGGTGTCCCTCATCCTGTCCTTTATGTCATGTGAC
ATCCAGCCCTGAAACCCCTGCTGAGCCAGTTCTACTGGAAGTGACCAGAGCATCCCCCATCTATGAACTG
GTGACCAATAACCAGACCCAGAGGCTCTTACAGGAAGCCACCATGAGCTCTCTCTGGTGTTCAGGGACCG
GAGATGTCATTGAGGACTGGTGCCGATGCGACTCGACTGCTTTTGGAGCAGATGGACTTCCTACCTGTGC
ACCCCTCCCACAGCCTGTGCTGAGACTTTCCACAGTACACGAGCCCAGCAGTAACCTCGTGGTCCTGGAG
TGGGAACATTCAGAGCCGCCAATTGGGGTGCAGATTGTAGACTACCTGATCCGGCAAGAGAAAGTCACTG
ACCGGATGGACCACTCCAAAGTAGAGACGGAAACAGTGCTGAGCTTTGTAGACGACATCATCTCTGGAGC
AAAGGCTCCATGTGCCATGCCGTCTCAGGTGCCAGACAAACAGCTCACCACGATTTCTCTCATCATCCGA
TGCCTGGAACCTGACACCATTTACATGTTCACCCTCTGGGGAGTAGATAACACAGGGCGACGTTCCAGGC
CAAGTGATGTGATTGTGAAGACCCCATGTCCTGTGGTGGATGATGTCAAAGCCCAAGAAATAGCAGACAA
GATCTACAATCTCTTCAATGGCTACACCAGTGGAAAGGAGCAACAGACTGCCTACAACACCCTTCTGGAT
CTGGGTTCTCCCACTTTGCACCGAGTCCTCTACCACTATAACCAGCACTATGAGAGTTTTGGGGAATTCA
CCTGGCGGTGTGAAGATGAGTTAGGACCCAGGAAAGCAGGCCTCATCCTTTCCCAGCTTGGAGATCTGAG
CAGCTGGTGCAATGGACTCCTTCAGGAGCCCAAGATAAGCTTGAGGCGTGGTTCACTCAAGTACCTGGGC
TGCCGCTACAGTGAGATCAAACCCTATGGACTGGACTGGTCAGAGCTCAGTCGGGACCTCAGGAAGACAT
GTGAAGAACAGACCCTGAGTGTCCCCTACAATGACTACGGGGACAGCAAAGACATCTAG

Translation (1302 aa):
MALAGLCALFACCWGPAAVLATAAGDVDPSKELECKLKSITVSALPFLRENDLSIMHSPSASEPKLLFSV
RNDFPGEMVVVDDLENTELPYFVLEISGNTEDIPLVRWRQQWLENGTLLFHIHHQDGAPSLPGQDPTEEP
QHESAEEELRILHISVMGGMIALLLSILCLVMILYTRRRWCKRRRVPQPQKSASAEAANEIHYIPSVLIG
GHGRESLRNARVQGHNSSGTLSIRETPILDGYEYDITDLRHHLQRECMNGGEDFASQVTRTLDSLQGCNE
KSGMDLTPGSDNAKLSLMNKYKDNIIATSPVDSNHQQATLLSHTSSSQRKRINNKARAGSAFLNPEGDSS
TEAENDPQLTFYTDPSRSRRRSRVGSPRSPVNKTTLTLISVTSCVIGLVCSSHVSCPLVVKITLHVPEHL
IADGSRFILLEGSQLDASDWLNPAQVVLFSQQNSSGPWAMDLCARRLLDPCEHQCDPETGRREHRAAGEC
LCYEGYMKDPVHKHLCIRNEWGTNQGPWPYTIFQRGFDLVLGEQPSDKIFRFTYTLGEGMWLPLSKSFVI
PPAELAINPSAKCKTDMTVMEDAVEVREELMTSSSFDSLEVLLDSFGPVRDCSKDNGGCSKNFRCISDRK
LDSTGCVCPSGLSPMKDSSGCYDRHIGVDCSDGFNGGCEQLCLQQMAPFPEDPTLYNILMFCGCIEDYKL
GVDGRSCQLVTETCPEGGDCGESREVPMNQTLFGEMFFGYNNQSKEVATGQVLKGTFRQNNFARGLDQQL
PDGLVVASVPLENQCLEEISEPTPDPDFLTGMVNFSEVSGYPVLQHWKVRSVMYHIKLNQAAISQAFSNA
LHSLDGATSRADFVALLDQFGNHYIQEAVYGFEESCSIWYPNKQVQRRLWLEYEDISKGNSPSDESEERE
RDPKVLTFPEYIASLSDSGTKRMAAGVRMECQSKGRCPSSCPLCHVTSSPETPAEPVLLEVTRASPIYEL
VTNNQTQRLLQEATMSSLWCSGTGDVIEDWCRCDSTAFGADGLPTCAPLPQPVLRLSTVHEPSSNLVVLE
WEHSEPPIGVQIVDYLIRQEKVTDRMDHSKVETETVLSFVDDIISGAKAPCAMPSQVPDKQLTTISLIIR
CLEPDTIYMFTLWGVDNTGRRSRPSDVIVKTPCPVVDDVKAQEIADKIYNLFNGYTSGKEQQTAYNTLLD
LGSPTLHRVLYHYNQHYESFGEFTWRCEDELGPRKAGLILSQLGDLSSWCNGLLQEPKISLRRGSLKYLG
CRYSEIKPYGLDWSELSRDLRKTCEEQTLSVPYNDYGDSKDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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