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Report for CCDS56294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56294.1 Public Homo sapiens 3 SCHIP1 24 110 108 CCDS HistoryNCBI Gene:29970Re-query CCDS DB by CCDS ID:56294.1Re-query CCDS DB by GeneID:29970See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56294.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000445224.6 ENSP00000404860.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445224.6Link to Ensembl Protein Viewer:ENSP00000404860.2Re-query CCDS DB by Nucleotide ID:ENST00000445224Re-query CCDS DB by Protein ID:ENSP00000404860
Original member Current member NCBI NM_001197109.2 NP_001184038.1 Accepted alive Link to Nucleotide Sequence:NM_001197109.2Link to Protein Sequence:NP_001184038.1Re-query CCDS DB by Nucleotide ID:NM_001197109Re-query CCDS DB by Protein ID:NP_001184038Link to BLAST:NP_001184038.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001184038.1 244 P0DPB3-4 244 100% 0 0

Chromosomal Locations for CCDS 56294.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 159840185 159840214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159866163 159866281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159886207 159886324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159887708 159887905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159888820 159888943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159892097 159892190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159896723 159896774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGGTACATCAGGATAACTGCTCGTATCAGGCACAGAAAAATGAGAGAGAGTCTATCAGACAGAAGTTGG
CA
CTTGGAAGCTTCTTTGATGATGGCCCAGGAATTTATACCAGCTGTAGCAAAAGTGGGAAGCCAAGCCT
T
TCCTCCCGACTGCAGAGTGGGATGAACTTGCAGATATGCTTTGTCAACGACAGTGGCAGTGATAAGGAC
AGT
GATGCTGATGACAGTAAGACTGAAACCAGCTTGGACACCCCCTTGTCTCCCATGAGCAAACAGAGTT
CT
TCCTATTCTGATAGAGACACTACTGAAGAGGAGTCTGAATCCTTGGATGACATGGACTTCCTTACAAG
G
CAAAAGAAATTGCAAGCTGAAGCCAAAATGGCCCTTGCCATGGCCAAACCAATGGCCAAAATGCAAGTA
GAA
GTGGAGAAACAGAACAGGAAAAAGTCTCCCGTCGCTGATCTTCTGCCACACATGCCTCATATAAGTG
AA
TGCTTGATGAAAAGAAGTTTAAAACCCACCGACCTGAGAGACATGACTATTGGGCAGCTACAAGTGAT
A
GTCAATGATCTCCATTCCCAGATAGAAAGCTTGAATGAAGAGTTGGTCCAGCTGCTTCTCATCCGAGAT
GAG
CTGCACACAGAGCAGGATGCCATGCTGGTGGACATTGAAGACTTGACCAGACATGCTGAAAGTCAGC
AG
AAGCACATGGCAGAGAAAATGCCTGCAAAGTGA


Translation (244 aa):
MVHQDNCSYQAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNLQICFVNDSGSDKD
S
DADDSKTETSLDTPLSPM
SKQSSSYSDRDTTEEESESLDDMDFLTRQKKLQAEAKMALAMAKPMAKMQV
E
VEKQNRKKSPVADL
LPHMPHISECLMKRSLKPTDLRDMTIGQLQVIVNDLHSQIESLNEELVQLLLIRD
E
LHTEQDAMLVDIEDLT
RHAESQQKHMAEKMPAK



Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser